The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4
In 2019, 10 million new cases of tuberculosis have been re- ported worldwide. Our data reports genetic analyses of a My- cobacterium tuberculosis strain SBH321 isolated from a 31- year-old female with pulmonary tuberculosis. The genomic DNA of the strain was extracted from pure culture and sub- ject...
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my.ums.eprints.306772023-05-19T02:58:48Z https://eprints.ums.edu.my/id/eprint/30677/ The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4 Jaeyres Jani Zainal Arifin Mustapha Chin Kai Ling Amabel Seow Ming Hui Roddy Teo Kamruddin Ahmed QR1-502 Microbiology RA421-790.95 Public health. Hygiene. Preventive medicine In 2019, 10 million new cases of tuberculosis have been re- ported worldwide. Our data reports genetic analyses of a My- cobacterium tuberculosis strain SBH321 isolated from a 31- year-old female with pulmonary tuberculosis. The genomic DNA of the strain was extracted from pure culture and sub- jected to sequencing using Illumina platform. M. tuberculosis strain SBH321 consists of 4,374,895 bp with G + C content of 65.59%. The comparative analysis by SNP-based phylogenetic analysis using maximum-likelihood method showed that our strain belonging to sublineage of the Ural family of Europe–America–Africa lineage (Lineage 4) and clustered with M. tuberculosis strain OFXR-4 from Taiwan. The whole genome sequence is deposited at DDBJ/ENA/GenBank under the ac- cession WCJH0 0 0 0 0 0 0 0 (SRR10230353). Elsevier Ltd 2020-10-08 Article NonPeerReviewed text en https://eprints.ums.edu.my/id/eprint/30677/1/The%20whole%20genome%20sequence%20data%20analyses%20of%20a%20mycobacterium%20tuberculosis%20strain%20sbh321%20isolated%20in%20Sabah%2C%20Malaysia%2C%20belongs%20to%20ural%20family%20of%20lineage%204-Abstract.pdf text en https://eprints.ums.edu.my/id/eprint/30677/2/The%20whole%20genome%20sequence%20data%20analyses%20of%20a%20Mycobacterium%20tuberculosis%20strain%20SBH321%20isolated%20in%20Sabah%2C%20Malaysia%2C%20belongs%20to%20Ural%20family%20of%20Lineage%204.pdf Jaeyres Jani and Zainal Arifin Mustapha and Chin Kai Ling and Amabel Seow Ming Hui and Roddy Teo and Kamruddin Ahmed (2020) The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4. https://reader.elsevier.com/reader/sd/pii/S2352340920312695?token=59968887257CDDD0F7E2DDA4E42A44110B83741E794C9F38A8B9A340F41707B94853CE454FF5961FA379D812964F9F7E&originRegion=eu-west-1&originCreation=20210826075040 |
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QR1-502 Microbiology RA421-790.95 Public health. Hygiene. Preventive medicine |
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QR1-502 Microbiology RA421-790.95 Public health. Hygiene. Preventive medicine Jaeyres Jani Zainal Arifin Mustapha Chin Kai Ling Amabel Seow Ming Hui Roddy Teo Kamruddin Ahmed The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4 |
description |
In 2019, 10 million new cases of tuberculosis have been re- ported worldwide. Our data reports genetic analyses of a My- cobacterium tuberculosis strain SBH321 isolated from a 31- year-old female with pulmonary tuberculosis. The genomic DNA of the strain was extracted from pure culture and sub- jected to sequencing using Illumina platform. M. tuberculosis strain SBH321 consists of 4,374,895 bp with G + C content of 65.59%. The comparative analysis by SNP-based phylogenetic analysis using maximum-likelihood method showed that our strain belonging to sublineage of the Ural family of Europe–America–Africa lineage (Lineage 4) and clustered with M. tuberculosis strain OFXR-4 from Taiwan. The whole genome sequence is deposited at DDBJ/ENA/GenBank under the ac- cession WCJH0 0 0 0 0 0 0 0 (SRR10230353). |
format |
Article |
author |
Jaeyres Jani Zainal Arifin Mustapha Chin Kai Ling Amabel Seow Ming Hui Roddy Teo Kamruddin Ahmed |
author_facet |
Jaeyres Jani Zainal Arifin Mustapha Chin Kai Ling Amabel Seow Ming Hui Roddy Teo Kamruddin Ahmed |
author_sort |
Jaeyres Jani |
title |
The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4 |
title_short |
The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4 |
title_full |
The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4 |
title_fullStr |
The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4 |
title_full_unstemmed |
The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4 |
title_sort |
whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in sabah, malaysia, belongs to ural family of lineage 4 |
publisher |
Elsevier Ltd |
publishDate |
2020 |
url |
https://eprints.ums.edu.my/id/eprint/30677/1/The%20whole%20genome%20sequence%20data%20analyses%20of%20a%20mycobacterium%20tuberculosis%20strain%20sbh321%20isolated%20in%20Sabah%2C%20Malaysia%2C%20belongs%20to%20ural%20family%20of%20lineage%204-Abstract.pdf https://eprints.ums.edu.my/id/eprint/30677/2/The%20whole%20genome%20sequence%20data%20analyses%20of%20a%20Mycobacterium%20tuberculosis%20strain%20SBH321%20isolated%20in%20Sabah%2C%20Malaysia%2C%20belongs%20to%20Ural%20family%20of%20Lineage%204.pdf https://eprints.ums.edu.my/id/eprint/30677/ https://reader.elsevier.com/reader/sd/pii/S2352340920312695?token=59968887257CDDD0F7E2DDA4E42A44110B83741E794C9F38A8B9A340F41707B94853CE454FF5961FA379D812964F9F7E&originRegion=eu-west-1&originCreation=20210826075040 |
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1768008544689324032 |