The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4

In 2019, 10 million new cases of tuberculosis have been re- ported worldwide. Our data reports genetic analyses of a My- cobacterium tuberculosis strain SBH321 isolated from a 31- year-old female with pulmonary tuberculosis. The genomic DNA of the strain was extracted from pure culture and sub- ject...

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Main Authors: Jaeyres Jani, Zainal Arifin Mustapha, Chin Kai Ling, Amabel Seow Ming Hui, Roddy Teo, Kamruddin Ahmed
Format: Article
Language:English
English
Published: Elsevier Ltd 2020
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Online Access:https://eprints.ums.edu.my/id/eprint/30677/1/The%20whole%20genome%20sequence%20data%20analyses%20of%20a%20mycobacterium%20tuberculosis%20strain%20sbh321%20isolated%20in%20Sabah%2C%20Malaysia%2C%20belongs%20to%20ural%20family%20of%20lineage%204-Abstract.pdf
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spelling my.ums.eprints.306772023-05-19T02:58:48Z https://eprints.ums.edu.my/id/eprint/30677/ The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4 Jaeyres Jani Zainal Arifin Mustapha Chin Kai Ling Amabel Seow Ming Hui Roddy Teo Kamruddin Ahmed QR1-502 Microbiology RA421-790.95 Public health. Hygiene. Preventive medicine In 2019, 10 million new cases of tuberculosis have been re- ported worldwide. Our data reports genetic analyses of a My- cobacterium tuberculosis strain SBH321 isolated from a 31- year-old female with pulmonary tuberculosis. The genomic DNA of the strain was extracted from pure culture and sub- jected to sequencing using Illumina platform. M. tuberculosis strain SBH321 consists of 4,374,895 bp with G + C content of 65.59%. The comparative analysis by SNP-based phylogenetic analysis using maximum-likelihood method showed that our strain belonging to sublineage of the Ural family of Europe–America–Africa lineage (Lineage 4) and clustered with M. tuberculosis strain OFXR-4 from Taiwan. The whole genome sequence is deposited at DDBJ/ENA/GenBank under the ac- cession WCJH0 0 0 0 0 0 0 0 (SRR10230353). Elsevier Ltd 2020-10-08 Article NonPeerReviewed text en https://eprints.ums.edu.my/id/eprint/30677/1/The%20whole%20genome%20sequence%20data%20analyses%20of%20a%20mycobacterium%20tuberculosis%20strain%20sbh321%20isolated%20in%20Sabah%2C%20Malaysia%2C%20belongs%20to%20ural%20family%20of%20lineage%204-Abstract.pdf text en https://eprints.ums.edu.my/id/eprint/30677/2/The%20whole%20genome%20sequence%20data%20analyses%20of%20a%20Mycobacterium%20tuberculosis%20strain%20SBH321%20isolated%20in%20Sabah%2C%20Malaysia%2C%20belongs%20to%20Ural%20family%20of%20Lineage%204.pdf Jaeyres Jani and Zainal Arifin Mustapha and Chin Kai Ling and Amabel Seow Ming Hui and Roddy Teo and Kamruddin Ahmed (2020) The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4. https://reader.elsevier.com/reader/sd/pii/S2352340920312695?token=59968887257CDDD0F7E2DDA4E42A44110B83741E794C9F38A8B9A340F41707B94853CE454FF5961FA379D812964F9F7E&originRegion=eu-west-1&originCreation=20210826075040
institution Universiti Malaysia Sabah
building UMS Library
collection Institutional Repository
continent Asia
country Malaysia
content_provider Universiti Malaysia Sabah
content_source UMS Institutional Repository
url_provider http://eprints.ums.edu.my/
language English
English
topic QR1-502 Microbiology
RA421-790.95 Public health. Hygiene. Preventive medicine
spellingShingle QR1-502 Microbiology
RA421-790.95 Public health. Hygiene. Preventive medicine
Jaeyres Jani
Zainal Arifin Mustapha
Chin Kai Ling
Amabel Seow Ming Hui
Roddy Teo
Kamruddin Ahmed
The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4
description In 2019, 10 million new cases of tuberculosis have been re- ported worldwide. Our data reports genetic analyses of a My- cobacterium tuberculosis strain SBH321 isolated from a 31- year-old female with pulmonary tuberculosis. The genomic DNA of the strain was extracted from pure culture and sub- jected to sequencing using Illumina platform. M. tuberculosis strain SBH321 consists of 4,374,895 bp with G + C content of 65.59%. The comparative analysis by SNP-based phylogenetic analysis using maximum-likelihood method showed that our strain belonging to sublineage of the Ural family of Europe–America–Africa lineage (Lineage 4) and clustered with M. tuberculosis strain OFXR-4 from Taiwan. The whole genome sequence is deposited at DDBJ/ENA/GenBank under the ac- cession WCJH0 0 0 0 0 0 0 0 (SRR10230353).
format Article
author Jaeyres Jani
Zainal Arifin Mustapha
Chin Kai Ling
Amabel Seow Ming Hui
Roddy Teo
Kamruddin Ahmed
author_facet Jaeyres Jani
Zainal Arifin Mustapha
Chin Kai Ling
Amabel Seow Ming Hui
Roddy Teo
Kamruddin Ahmed
author_sort Jaeyres Jani
title The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4
title_short The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4
title_full The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4
title_fullStr The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4
title_full_unstemmed The whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in Sabah, Malaysia, belongs to ural family of lineage 4
title_sort whole genome sequence data analyses of a mycobacterium tuberculosis strain sbh321 isolated in sabah, malaysia, belongs to ural family of lineage 4
publisher Elsevier Ltd
publishDate 2020
url https://eprints.ums.edu.my/id/eprint/30677/1/The%20whole%20genome%20sequence%20data%20analyses%20of%20a%20mycobacterium%20tuberculosis%20strain%20sbh321%20isolated%20in%20Sabah%2C%20Malaysia%2C%20belongs%20to%20ural%20family%20of%20lineage%204-Abstract.pdf
https://eprints.ums.edu.my/id/eprint/30677/2/The%20whole%20genome%20sequence%20data%20analyses%20of%20a%20Mycobacterium%20tuberculosis%20strain%20SBH321%20isolated%20in%20Sabah%2C%20Malaysia%2C%20belongs%20to%20Ural%20family%20of%20Lineage%204.pdf
https://eprints.ums.edu.my/id/eprint/30677/
https://reader.elsevier.com/reader/sd/pii/S2352340920312695?token=59968887257CDDD0F7E2DDA4E42A44110B83741E794C9F38A8B9A340F41707B94853CE454FF5961FA379D812964F9F7E&originRegion=eu-west-1&originCreation=20210826075040
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