Towards a rigorous assessment of systems biology models: The DREAM3 challenges

by Prill R.J., Marbach D., Saez-Rodriguez J., Sorger P.K., Alexopoulos L.G., Xue X., Clarke N.D., Altan-Bonnet G., Stolovitzky G.
Published 2018

Evaluation of methods for modeling transcription factor sequence specificity

by Weirauch, M.T., Cote, A., Norel, R., Annala, M., Zhao, Y., Riley, T.R., Saez-Rodriguez, J., Cokelaer, T., Vedenko, A., Talukder, S., Bussemaker, H.J., Quaid, M.D., Bulyk, M.L., Stolovitzky, G., Hughes, T.R., Agius, P., Arvey, A., Bucher, P., Callan Jr., C.G., Chang, C.W., Chen, C.-Y., Chen, Y.-S., Chu, Y.-W., Grau, J., Grosse, I., Jagannathan, V., Keilwagen, J., Kiebasa, S.M., Kinney, J.B., Klein, H., Kursa, M.B., Lähdesmäki, H., Laurila, K., Lei, C., Leslie, C., Linhart, C., Murugan, A., Myšičková, A., Noble, W.S., Nykter, M., Orenstein, Y., Posch, S., Ruan, J., Rudnicki, W.R., Schmid, C.D., Shamir, R., Sung, W.-K., Vingron, M., Zhang, Z.
Published 2014