High-throughput sequencing data and the impact of plant gene annotation quality

by Vaattovaara, Aleksia, Leppälä, Johanna, Salojärvi, Jarkko, Wrzaczek, Michael
Published 2019

Phylogenetic analysis of allotetraploid species using polarized genomic sequences

by Leal, J. Luis, Milesi, Pascal, Salojärvi, Jarkko, Lascoux, Martin
Published 2024

Genotype-specific expression and NLR repertoire contribute to phenotypic resistance diversity in Plantago lanceolata

by Safdari, Pezhman, Höckerstedt, Layla, Brosche, Mikael, Salojärvi, Jarkko, Laine, Anna-Liisa
Published 2022

Colonic mucosal microbiota and association of bacterial taxa with the expression of host antimicrobial peptides in pediatric ulcerative colitis

by Jalanka, Jonna, Cheng, Jing, Hiippala, Kaisa, Ritari, Jarmo, Salojärvi, Jarkko, Ruuska, Tarja, Kalliomäki, Marko, Satokari, Reetta
Published 2021

Assembly and analysis of unmapped genome sequence reads reveal novel sequence and variation in dogs

by Holden, Lindsay A., Arumilli, Meharji, Hytönen, Marjo K., Hundi, Sruthi, Salojärvi, Jarkko, Brown, Kim H., Lohi, Hannes
Published 2018

Chromosome-level genome assembly of the diploid blueberry Vaccinium darrowii provides insights into its subtropical adaptation and cuticle synthesis

by Cui, Fuqiang, Ye, Xiaoxue, Li, Xiaoxiao, Yang, Yifan, Hu, Zhubing, Overmyer, Kirk, Brosché, Mikael, Yu, Hong, Salojärvi, Jarkko
Published 2022

Mechanistic insights into the evolution of DUF26-containing proteins in land plants

by Vaattovaara, Aleksia, Brandt, Benjamin, Rajaraman, Sitaram, Safronov, Omid, Veidenberg, Andres, Luklová, Markéta, Kangasjärvi, Jaakko, Löytynoja, Ari, Hothorn, Michael, Salojärvi, Jarkko, Wrzaczek, Michael
Published 2020

Interaction of methyl viologen-induced chloroplast and mitochondrial signalling in Arabidopsis

by Cui, Fuqiang, Brosché, Mikael, Shapiguzov, Alexey, He, Xin-Qiang, Vainonen, Julia P., Leppälä, Johanna, Trotta, Andrea, Kangasjärvi, Saijaliisa, Salojärvi, Jarkko, Kangasjärvi, Jaakko, Overmyer, Kirk
Published 2019

Genetic diversity analysis of sapindus in China and extraction of a core germplasm collection using EST-SSR markers

by Liu, Jiming, Gao, Shilun, Xu, Yuanyuan, Wang, Mianzhi, Ngiam, Jia Jun, Cho, Nicholas Rui Wen, Jong, Joan Jing Yi, Weng, Xuehuang, Jia, Liming, Salojärvi, Jarkko
Published 2022

Tissue-specific study across the stem reveals the chemistry and transcriptome dynamics of birch bark

by Alonso-Serra, Juan, Safronov, Omid, Lim, Kean-Jin, Fraser-Miller, Sara J., Blokhina, Olga B., Campilho, Ana, Chong, Sun-Li, Fagerstedt, Kurt, Haavikko, Raisa, Helariutta, Ykä, Immanen, Juha, Kangasjärvi, Jaakko, Kauppila, Tiina J., Lehtonen, Mari, Ragni, Laura, Rajaraman, Sitaram, Räsänen, Riikka-Marjaana, Safdari, Pezhman, Tenkanen, Maija, Yli-Kauhaluoma, Jari T., Teeri, Teemu H., Strachan, Clare J., Nieminen, Kaisa, Salojärvi, Jarkko
Published 2020

Tree architecture: a strigolactone-deficient mutant reveals a connection between branching order and auxin gradient along the tree stem

by Su, Chang, Kokosza, Andrzej, Xie, Xiaonan, Pěnčík, Aleš, Zhang, Youjun, Raumonen, Pasi, Shi, Xueping, Muranen, Sampo, Topcu, Melis Kucukoglu, Immanen, Juha, Hagqvist, Risto, Safronov, Omid, Alonso-Serra, Juan, Eswaran, Gugan, Venegas, Mirko Pavicic, Ljung, Karin, Ward, Sally, Mähönen, Ari Pekka, Himanen, Kristiina, Salojärvi, Jarkko, Fernie, Alisdair R., Novák, Ondřej, Leyser, Ottoline, Pałubicki, Wojtek, Helariutta, Ykä, Nieminen, Kaisa
Published 2024

Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors

by Shapiguzov, Alexey, Fernie, Alisdair R., Vainonen, Julia P., Hunter, Kerri, Tossavainen, Helena, Tiwari, Arjun, Järvi, Sari, Hellman, Maarit, Aarabi, Fayezeh, Alseekh, Saleh, Wybouw, Brecht, Van Der Kelen, Katrien, Nikkanen, Lauri, Krasensky-Wrzaczek, Julia, Sipari, Nina, Keinänen, Markku, Tyystjärvi, Esa, Rintamäki, Eevi, De Rybel, Bert, Salojärvi, Jarkko, Van Breusegem, Frank, Brosché, Mikael, Permi, Perttu, Aro, Eva-Mari, Wrzaczek, Michael, Kangasjärvi, Jaakko
Published 2019

The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation

by Rendón-Anaya, Martha, Ibarra-Laclette, Enrique, Méndez-Bravo, Alfonso, Lan, Tianying, Zheng, Chunfang, Carretero-Paulet, Lorenzo, Perez-Torres, Claudia Anahí, Chacón-López, Alejandra, Hernandez-Guzmán, Gustavo, Chang, Tien-Hao, Farr, Kimberly M, Barbazuk, W Brad, Chamala, Srikar, Mutwil, Marek, Shivhare, Devendra, Alvarez-Ponce, David, Mitter, Neena, Hayward, Alice, Fletcher, Stephen, Rozas, Julio, Sánchez Gracia, Alejandro, Kuhn, David, Barrientos-Priego, Alejandro F, Salojärvi, Jarkko, Librado, Pablo, Sankoff, David, Herrera-Estrella, Alfredo, Albert, Victor A, Herrera-Estrella, Luis
Published 2021

Genomic insights into rapid speciation within the world's largest tree genus Syzygium

by Low, Yee Wen, Rajaraman, Sitaram, Tomlin, Crystal M., Ahmad, Joffre Ali, Ardi, Wisnu H., Armstrong, Kate, Athen, Parusuraman, Berhaman, Ahmad, Bone, Ruth E., Cheek, Martin, Cho, Nicholas R. W., Choo, Le Min, Cowie, Ian D., Crayn, Darren, Fleck, Steven J., Ford, Andrew J., Forster, Paul, Girmansyah, Deden, Goyder, David J., Gray, Bruce, Heatubun, Charlie D., Ibrahim, Ali, Ibrahim, Bazilah, Jayasinghe, Himesh D., Kalat, Muhammad Ariffin, Kathriarachchi, Hashendra S., Kintamani, Endang, Koh, Sin Lan, Lai, Joseph T. K., Lee, Serena M. L., Leong, Paul K. F., Lim, Wei Hao, Lum, Shawn K. Y., Mahyuni, Ridha, McDonald, William J. F., Metali, Faizah, Mustaqim, Wendy A., Naiki, Akiyo, Ngo, Kang Min, Niissalo, Matti, Ranasinghe, Subhani, Repin, Rimi, Rustiami, Himmah, Simbiak, Victor, Sukri, Rahayu S., Sunarti, Siti, Trethowan, Liam A., Trias-Blasi, Anna, Vasconcelos, Thais N. C., Wanma, Jimmy F., Widodo, Pudji, Wijesundara, Douglas Siril A., Worboys, Stuart, Yap, Jing Wei, Yong, Kien Thai, Khew, Gillian S. W., Salojarvi, Jarkko, Michael, Todd P., Middleton, David J., Burslem, David F. R. P., Lindqvist, Charlotte, Lucas, Eve J., Albert, Victor A.
Published 2022

Genomic insights into rapid speciation within the world's largest tree genus Syzygium

by Low, Yee Wen, Rajaraman, Sitaram, Tomlin, Crystal M., Ahmad, Joffre Ali, Ardi, Wisnu H., Armstrong, Kate, Athen, Parusuraman, Berhaman, Ahmad, Bone, Ruth E., Cheek, Martin, Cho, Nicholas Rui Wen, Choo, Le Min, Cowie, Ian D., Crayn, Darren, Fleck, Steven J., Ford, Andrew J., Forster, Paul I., Girmansyah, Deden, Goyder, David J., Gray, Bruce, Heatubun, Charlie D., Ibrahim, Ali, Ibrahim, Bazilah, Jayasinghe, Himesh D., Kalat, Muhammad Ariffin, Kathriarachchi, Hashendra S., Kintamani, Endang, Koh, Sin Lan, Lai, Joseph T. K., Lee, Serena M. L., Leong, Paul K. F., Lim, Wei Hao, Lum, Shawn Kaihekulani Yamauchi, Mahyuni, Ridha, McDonald, William J. F., Metali, Faizah, Mustaqim, Wendy A., Naiki, Akiyo, Ngo, Kang Min, Niissalo, Matti, Ranasinghe, Subhani, Repin, Rimi, Rustiami, Himmah, Simbiak, Victor I., Sukri, Rahayu S., Sunarti, Siti, Trethowan, Liam A., Trias-Blasi, Anna, Vasconcelos, Thais N. C., Wanma, Jimmy F., Widodo, Pudji, Wijesundara, Douglas Siril A., Worboys, Stuart, Yap, Jing Wei, Yong, Kien Thai, Khew, Gillian S. W., Salojärvi, Jarkko, Michael, Todd P., Middleton, David J., Burslem, David F. R. P., Lindqvist, Charlotte, Lucas, Eve J., Albert, Victor A.
Published 2023