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Previous study on recombinant manganeese superoxide dismutase of Staphylococcus equorum <br /> <br /> (rMnSODSeq) showed that the enzyme has good stability in a wide range of pH and temperature, <br /> <br /> but this enzyme is unstable to long-term UVC exposure. This researc...
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id-itb.:294162018-06-21T14:21:56Z#TITLE_ALTERNATIVE# DZAKY RAZANI NIM : 10714020, MUTHIA Indonesia Final Project INSTITUT TEKNOLOGI BANDUNG https://digilib.itb.ac.id/gdl/view/29416 Previous study on recombinant manganeese superoxide dismutase of Staphylococcus equorum <br /> <br /> (rMnSODSeq) showed that the enzyme has good stability in a wide range of pH and temperature, <br /> <br /> but this enzyme is unstable to long-term UVC exposure. This research aimed to increase <br /> <br /> rMnSODSeq stability towards UVC exposure by amino acid substitution at domain that allow dimer <br /> <br /> interface interaction. Interface interaction will increase dimer stability and UVC stability. This <br /> <br /> research started by determining site of substitution, in silico, using COOT program. Substitution <br /> <br /> sites from asparagin73 to phenylalanin (N73F) and serin126 to cystein (S126C) were obtained from <br /> <br /> screening process. Amino acid substitution was performed to rMnSODSeq gene in pJexpress414 <br /> <br /> (pJexpress414_sod) by site directed mutagenesis with Polymerase Chain Reaction with Two Single <br /> <br /> Reaction IN Parallel (SPRINP PCR) technique. Product of mutation was confirmed with sequece <br /> <br /> analysis, mutation of N73F and S126C were obtained using annealing temperature of 48°C and <br /> <br /> 50°C. Overproduction of wild-type and mutant rMnSODSeq was performed in Escherichia coli <br /> <br /> BL21(DE3) under condition of temperature 37°C, agitation 150 rpm, and isopropyl β-D-1- <br /> <br /> thiogalactopyranoside (IPTG) induction at final concentration of 1 mM for 5 hours. Protein was <br /> <br /> purified with Ni2+ -NTA column and its activity determined qualitatively with zymography and <br /> <br /> quantitatively with colorimetry. Activity test on mutant protein showed that substitution <br /> <br /> asparagin73 to phenylalanin and serin126 to cystein are decrease protein activity. Pecent inhibition <br /> <br /> of 10 µg rMnSODSeq wild-type, rMnSODSeq_N73F, and rMnSODSeq_S126C are 76,1%, 62,8%, and <br /> <br /> 56,2%. Stability of rMnSODSeq_N73F and rMnSODSeq_S126C toward UVC exposure are increase. <br /> <br /> Residual activity of rMnSODSeq wild-type, rMnSODSeq_N73F, and rMnSODSeq_S126C after UVC <br /> <br /> exposure for 50 minutes are adalah 80,2%, 95,04%, 84,93%. <br /> text |
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Previous study on recombinant manganeese superoxide dismutase of Staphylococcus equorum <br />
<br />
(rMnSODSeq) showed that the enzyme has good stability in a wide range of pH and temperature, <br />
<br />
but this enzyme is unstable to long-term UVC exposure. This research aimed to increase <br />
<br />
rMnSODSeq stability towards UVC exposure by amino acid substitution at domain that allow dimer <br />
<br />
interface interaction. Interface interaction will increase dimer stability and UVC stability. This <br />
<br />
research started by determining site of substitution, in silico, using COOT program. Substitution <br />
<br />
sites from asparagin73 to phenylalanin (N73F) and serin126 to cystein (S126C) were obtained from <br />
<br />
screening process. Amino acid substitution was performed to rMnSODSeq gene in pJexpress414 <br />
<br />
(pJexpress414_sod) by site directed mutagenesis with Polymerase Chain Reaction with Two Single <br />
<br />
Reaction IN Parallel (SPRINP PCR) technique. Product of mutation was confirmed with sequece <br />
<br />
analysis, mutation of N73F and S126C were obtained using annealing temperature of 48°C and <br />
<br />
50°C. Overproduction of wild-type and mutant rMnSODSeq was performed in Escherichia coli <br />
<br />
BL21(DE3) under condition of temperature 37°C, agitation 150 rpm, and isopropyl β-D-1- <br />
<br />
thiogalactopyranoside (IPTG) induction at final concentration of 1 mM for 5 hours. Protein was <br />
<br />
purified with Ni2+ -NTA column and its activity determined qualitatively with zymography and <br />
<br />
quantitatively with colorimetry. Activity test on mutant protein showed that substitution <br />
<br />
asparagin73 to phenylalanin and serin126 to cystein are decrease protein activity. Pecent inhibition <br />
<br />
of 10 µg rMnSODSeq wild-type, rMnSODSeq_N73F, and rMnSODSeq_S126C are 76,1%, 62,8%, and <br />
<br />
56,2%. Stability of rMnSODSeq_N73F and rMnSODSeq_S126C toward UVC exposure are increase. <br />
<br />
Residual activity of rMnSODSeq wild-type, rMnSODSeq_N73F, and rMnSODSeq_S126C after UVC <br />
<br />
exposure for 50 minutes are adalah 80,2%, 95,04%, 84,93%. <br />
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DZAKY RAZANI NIM : 10714020, MUTHIA |
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DZAKY RAZANI NIM : 10714020, MUTHIA #TITLE_ALTERNATIVE# |
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DZAKY RAZANI NIM : 10714020, MUTHIA |
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DZAKY RAZANI NIM : 10714020, MUTHIA |
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https://digilib.itb.ac.id/gdl/view/29416 |
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1822022061923500032 |