THE EFFECT OF HEPATITIS B VIRUS X PROTEIN MUTANT T118N AND K130M/V131I ON APOPTOSIS, CELL CYCLE, AND TRANSCRIPTOME PROFILE OF HEPG2 CELLS

Hepatitis B virus (HBV) is a major cause of liver cirrhosis which could develop into liver carcinoma. HBV X protein (HBx) is known to have a role in the pathogenesis of liver carcinoma caused by HBV. Mutations in gene x affect the functional mechanism of HBx and play a role in the development of...

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Main Author: Rizky Gilang Mahaputra, Andhika
Format: Theses
Language:Indonesia
Online Access:https://digilib.itb.ac.id/gdl/view/47236
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Institution: Institut Teknologi Bandung
Language: Indonesia
id id-itb.:47236
spelling id-itb.:472362020-03-17T08:25:04ZTHE EFFECT OF HEPATITIS B VIRUS X PROTEIN MUTANT T118N AND K130M/V131I ON APOPTOSIS, CELL CYCLE, AND TRANSCRIPTOME PROFILE OF HEPG2 CELLS Rizky Gilang Mahaputra, Andhika Indonesia Theses Apoptosis, cell cycle, HBx, HepG2, transcriptome, NGS. INSTITUT TEKNOLOGI BANDUNG https://digilib.itb.ac.id/gdl/view/47236 Hepatitis B virus (HBV) is a major cause of liver cirrhosis which could develop into liver carcinoma. HBV X protein (HBx) is known to have a role in the pathogenesis of liver carcinoma caused by HBV. Mutations in gene x affect the functional mechanism of HBx and play a role in the development of chronic hepatitis B into liver carcinoma. The purpose of this study is to determine the effect of HBx T118N and K130M/V131I on apoptosis and cell cycle in HepG2 cells using the flow cytomery and to determine the transcriptome profile of HepG2 cells using Next Generation Sequencing (NGS). Apoptosis, cell cycle, and transcriptome profile of HepG2 cells were observed by comparing the effect of HBx T118N and HBx K130M/V131I to HBx wild-type. The results of apoptosis analysis showed a decrease in apoptosis in HepG2 cells expressing HBx K130M/V131I and increased apoptosis in HepG2 cells expressing HBx T118N in the early apoptosis and late apoptosis, as compared to HepG2 cells expressing HBx wild-type. The results of cell cycle analysis showed no difference in the cell cycle regulation of HepG2 cells expressing HBx wild-type, HBx K130M/V131I, and HBx T118N. Transcriptomic analysis using NGS showed upregulation in the hspa6 gene and downregulation in the rna28s5 gene. Both genes are known to play a role in apoptosis and cell cycle regulation. text
institution Institut Teknologi Bandung
building Institut Teknologi Bandung Library
continent Asia
country Indonesia
Indonesia
content_provider Institut Teknologi Bandung
collection Digital ITB
language Indonesia
description Hepatitis B virus (HBV) is a major cause of liver cirrhosis which could develop into liver carcinoma. HBV X protein (HBx) is known to have a role in the pathogenesis of liver carcinoma caused by HBV. Mutations in gene x affect the functional mechanism of HBx and play a role in the development of chronic hepatitis B into liver carcinoma. The purpose of this study is to determine the effect of HBx T118N and K130M/V131I on apoptosis and cell cycle in HepG2 cells using the flow cytomery and to determine the transcriptome profile of HepG2 cells using Next Generation Sequencing (NGS). Apoptosis, cell cycle, and transcriptome profile of HepG2 cells were observed by comparing the effect of HBx T118N and HBx K130M/V131I to HBx wild-type. The results of apoptosis analysis showed a decrease in apoptosis in HepG2 cells expressing HBx K130M/V131I and increased apoptosis in HepG2 cells expressing HBx T118N in the early apoptosis and late apoptosis, as compared to HepG2 cells expressing HBx wild-type. The results of cell cycle analysis showed no difference in the cell cycle regulation of HepG2 cells expressing HBx wild-type, HBx K130M/V131I, and HBx T118N. Transcriptomic analysis using NGS showed upregulation in the hspa6 gene and downregulation in the rna28s5 gene. Both genes are known to play a role in apoptosis and cell cycle regulation.
format Theses
author Rizky Gilang Mahaputra, Andhika
spellingShingle Rizky Gilang Mahaputra, Andhika
THE EFFECT OF HEPATITIS B VIRUS X PROTEIN MUTANT T118N AND K130M/V131I ON APOPTOSIS, CELL CYCLE, AND TRANSCRIPTOME PROFILE OF HEPG2 CELLS
author_facet Rizky Gilang Mahaputra, Andhika
author_sort Rizky Gilang Mahaputra, Andhika
title THE EFFECT OF HEPATITIS B VIRUS X PROTEIN MUTANT T118N AND K130M/V131I ON APOPTOSIS, CELL CYCLE, AND TRANSCRIPTOME PROFILE OF HEPG2 CELLS
title_short THE EFFECT OF HEPATITIS B VIRUS X PROTEIN MUTANT T118N AND K130M/V131I ON APOPTOSIS, CELL CYCLE, AND TRANSCRIPTOME PROFILE OF HEPG2 CELLS
title_full THE EFFECT OF HEPATITIS B VIRUS X PROTEIN MUTANT T118N AND K130M/V131I ON APOPTOSIS, CELL CYCLE, AND TRANSCRIPTOME PROFILE OF HEPG2 CELLS
title_fullStr THE EFFECT OF HEPATITIS B VIRUS X PROTEIN MUTANT T118N AND K130M/V131I ON APOPTOSIS, CELL CYCLE, AND TRANSCRIPTOME PROFILE OF HEPG2 CELLS
title_full_unstemmed THE EFFECT OF HEPATITIS B VIRUS X PROTEIN MUTANT T118N AND K130M/V131I ON APOPTOSIS, CELL CYCLE, AND TRANSCRIPTOME PROFILE OF HEPG2 CELLS
title_sort effect of hepatitis b virus x protein mutant t118n and k130m/v131i on apoptosis, cell cycle, and transcriptome profile of hepg2 cells
url https://digilib.itb.ac.id/gdl/view/47236
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