First Mitogenome of Endangered Enteromius thysi (Actinopterygii: Cypriniformes: Cyprinidae) from Africa: Characterization and Phylogeny
The complete mitochondrial genome of endangered Enteromius thysi was determined from Cameroon in Western Africa. The genome was 16,688 bp in length, comprising 37 genes (13 PCGs, 2 rRNAs, 22 tRNAs, and an AT-rich control region). The heavy strand accommodates 28 genes (12 PCGs, 2 rRNAs, and 14 tR...
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Multidisciplinary Digital Publishing Institute (MDPI)
2022
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Online Access: | https://repository.unair.ac.id/125161/1/21.pdf https://repository.unair.ac.id/125161/2/21%20T.pdf https://repository.unair.ac.id/125161/3/22.pdf https://repository.unair.ac.id/125161/6/ethics%20sapto2.pdf https://repository.unair.ac.id/125161/ https://www.mdpi.com/2410-3888/8/1/25 https://doi.org/10.3390/fishes8010025 |
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id-langga.1251612023-04-28T09:54:56Z https://repository.unair.ac.id/125161/ First Mitogenome of Endangered Enteromius thysi (Actinopterygii: Cypriniformes: Cyprinidae) from Africa: Characterization and Phylogeny Shantanu Kundu, ,- Jerome D. Binarao, ,- Piyumi S. De Alwis, ,- Ah Ran Kim, ,- Soo-Rin Lee, ,- Sapto Andriyono, ,- Fantong Zealous Gietbong, ,- Hyun-Woo Kim, ,- SH Aquaculture. Fisheries. Angling SH20.3-191 Aquaculture The complete mitochondrial genome of endangered Enteromius thysi was determined from Cameroon in Western Africa. The genome was 16,688 bp in length, comprising 37 genes (13 PCGs, 2 rRNAs, 22 tRNAs, and an AT-rich control region). The heavy strand accommodates 28 genes (12 PCGs, 2 rRNAs, and 14 tRNAs), whereas the light strand holds 9 genes (NAD6 and 8 tRNAs). The E. thysi mitogenome is AT-biased (60.5%), as exhibited in other Enteromius species. Most of the PCGs start with the ATG initiation codon, except COI, with GTG, and seven PCGs end with the TAA termination codon, except some with an incomplete termination codon. Most of the tRNAs showed classical cloverleaf secondary structures, except tRNA-serine (trnS1). Bayesian phylogeny distinctly separated E. thysi from other congeners. The control regions of Enteromius species exhibited highly variable nucleotides, and parsimony-informative sites were found in the conserved sequence blockIII (CSB-III) compared with other domains and a unique 9 bp tandem repeat (ATGCATGGT) in the variable-number tandem repeats (VNTRs) region of E. thysi. The present phylogeny with limited mitogenomes showed an uneven diversity and evolutionary patterns of Enteromius species distributed in the northwestern and southeastern riverine systems in Africa, which warrants further investigation. Based on the results of the present study, we recommend additional surveys, in-depth taxonomy, and the generation of more mitogenomes that could resolve the diversification pattern of Enteromius species in Africa Multidisciplinary Digital Publishing Institute (MDPI) 2022 Article PeerReviewed text en https://repository.unair.ac.id/125161/1/21.pdf text en https://repository.unair.ac.id/125161/2/21%20T.pdf text en https://repository.unair.ac.id/125161/3/22.pdf text en https://repository.unair.ac.id/125161/6/ethics%20sapto2.pdf Shantanu Kundu, ,- and Jerome D. Binarao, ,- and Piyumi S. De Alwis, ,- and Ah Ran Kim, ,- and Soo-Rin Lee, ,- and Sapto Andriyono, ,- and Fantong Zealous Gietbong, ,- and Hyun-Woo Kim, ,- (2022) First Mitogenome of Endangered Enteromius thysi (Actinopterygii: Cypriniformes: Cyprinidae) from Africa: Characterization and Phylogeny. Fishes, 8 (1). ISSN F2410-3888 https://www.mdpi.com/2410-3888/8/1/25 https://doi.org/10.3390/fishes8010025 |
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SH Aquaculture. Fisheries. Angling SH20.3-191 Aquaculture Shantanu Kundu, ,- Jerome D. Binarao, ,- Piyumi S. De Alwis, ,- Ah Ran Kim, ,- Soo-Rin Lee, ,- Sapto Andriyono, ,- Fantong Zealous Gietbong, ,- Hyun-Woo Kim, ,- First Mitogenome of Endangered Enteromius thysi (Actinopterygii: Cypriniformes: Cyprinidae) from Africa: Characterization and Phylogeny |
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The complete mitochondrial genome of endangered Enteromius thysi was determined from
Cameroon in Western Africa. The genome was 16,688 bp in length, comprising 37 genes (13 PCGs,
2 rRNAs, 22 tRNAs, and an AT-rich control region). The heavy strand accommodates 28 genes (12
PCGs, 2 rRNAs, and 14 tRNAs), whereas the light strand holds 9 genes (NAD6 and 8 tRNAs). The
E. thysi mitogenome is AT-biased (60.5%), as exhibited in other Enteromius species. Most of the PCGs
start with the ATG initiation codon, except COI, with GTG, and seven PCGs end with the TAA
termination codon, except some with an incomplete termination codon. Most of the tRNAs showed
classical cloverleaf secondary structures, except tRNA-serine (trnS1). Bayesian phylogeny distinctly
separated E. thysi from other congeners. The control regions of Enteromius species exhibited highly
variable nucleotides, and parsimony-informative sites were found in the conserved sequence blockIII (CSB-III) compared with other domains and a unique 9 bp tandem repeat (ATGCATGGT) in the
variable-number tandem repeats (VNTRs) region of E. thysi. The present phylogeny with limited
mitogenomes showed an uneven diversity and evolutionary patterns of Enteromius species
distributed in the northwestern and southeastern riverine systems in Africa, which warrants further
investigation. Based on the results of the present study, we recommend additional surveys, in-depth
taxonomy, and the generation of more mitogenomes that could resolve the diversification pattern
of Enteromius species in Africa |
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Article PeerReviewed |
author |
Shantanu Kundu, ,- Jerome D. Binarao, ,- Piyumi S. De Alwis, ,- Ah Ran Kim, ,- Soo-Rin Lee, ,- Sapto Andriyono, ,- Fantong Zealous Gietbong, ,- Hyun-Woo Kim, ,- |
author_facet |
Shantanu Kundu, ,- Jerome D. Binarao, ,- Piyumi S. De Alwis, ,- Ah Ran Kim, ,- Soo-Rin Lee, ,- Sapto Andriyono, ,- Fantong Zealous Gietbong, ,- Hyun-Woo Kim, ,- |
author_sort |
Shantanu Kundu, ,- |
title |
First Mitogenome of Endangered Enteromius thysi (Actinopterygii: Cypriniformes:
Cyprinidae) from Africa: Characterization and Phylogeny |
title_short |
First Mitogenome of Endangered Enteromius thysi (Actinopterygii: Cypriniformes:
Cyprinidae) from Africa: Characterization and Phylogeny |
title_full |
First Mitogenome of Endangered Enteromius thysi (Actinopterygii: Cypriniformes:
Cyprinidae) from Africa: Characterization and Phylogeny |
title_fullStr |
First Mitogenome of Endangered Enteromius thysi (Actinopterygii: Cypriniformes:
Cyprinidae) from Africa: Characterization and Phylogeny |
title_full_unstemmed |
First Mitogenome of Endangered Enteromius thysi (Actinopterygii: Cypriniformes:
Cyprinidae) from Africa: Characterization and Phylogeny |
title_sort |
first mitogenome of endangered enteromius thysi (actinopterygii: cypriniformes:
cyprinidae) from africa: characterization and phylogeny |
publisher |
Multidisciplinary Digital Publishing Institute (MDPI) |
publishDate |
2022 |
url |
https://repository.unair.ac.id/125161/1/21.pdf https://repository.unair.ac.id/125161/2/21%20T.pdf https://repository.unair.ac.id/125161/3/22.pdf https://repository.unair.ac.id/125161/6/ethics%20sapto2.pdf https://repository.unair.ac.id/125161/ https://www.mdpi.com/2410-3888/8/1/25 https://doi.org/10.3390/fishes8010025 |
_version_ |
1765216135172587520 |