ANALISIS HOMOLOGI, PHYLOGENETIC TREE DAN PREDIKSI EPITOP GEN PENYANDI 37 kDa ompA DARI ISOLAT Pasteurella multocida ASAL NUSA TENGGARA TIMUR PENELITIAN EKSPLORATIF LABORATORIS

• Main Author: ARINI RAHMI DEWI, 061514253020
• Format: Theses and Dissertations NonPeerReviewed
• Language: Indonesian; Indonesian
• Published: 2019
• Subjects: SF600-1100 Veterinary medicine
• Online Access: http://repository.unair.ac.id/83352/1/TPKMV.%2006-19%20%20Dew%20a%20Abstrak.pdf; http://repository.unair.ac.id/83352/2/TPKMV.%2006-19%20%20Dew%20a.pdf; http://repository.unair.ac.id/83352/; http://lib.unair.ac.id
• Institution: Universitas Airlangga

Thirty seven kDa omp A gene of Pasteurella multocida isolates from NTT buffalo, NTT cattle, and Katha strains were analyzed nucleotide sequence homology and phylogenetic tree with ruminant isolates from various countries in the world: India, China, Iran, and USA from GenBank data and B cell epitope predictions from both NTT isolates. Three Nucleotide sequences from three isolates were homology analyzed using BLAST at NCBI then phylogenetic tree using MEGA-X program and epitope prediction by online program at IEDB. The results showed 93-100% homology, phylogenetic tree of buffalo isolate and strain Katha with bovine from India, China, and Iran; buffalo from India; yak from China; calf from India; and cattle from India. Prediction tools found 5 peptida from both NTT and strain Katha isolates which had a logscore value above 1.