Sequencing and characterization of complete mitogenome DNA for Rasbora myersi (Cypriniformes: Cyprinidae: Rasbora) and its evolutionary significance

The Seluang fish (Rasbora myersi) is a small ray-finned fish categorized under the genus Rasbora in the Cyprinidae family. In this study, the complete mitogenome sequence of R. myersi was sequenced using two primer pairs targeting overlapping regions. The mitogenome is 16,581 bp in length, encompass...

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Main Authors: Chung, Hui Hui, Whye, Leonard Kit Lim, Roja, Jill Sela, Cynthia Keranti, Anak Kamar, Liaob, Yunshi, Lam, Tommy Tsan-Yuk, Chong, Yee Ling
Format: Article
Language:English
Published: Elsevier Ltd. 2019
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Online Access:http://ir.unimas.my/id/eprint/27107/1/Leonard%20Whye%20Kit%20Lima.pdf
http://ir.unimas.my/id/eprint/27107/
https://www.sciencedirect.com/science/article/pii/S2452014419301414?dgcid=author#ac0005
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Institution: Universiti Malaysia Sarawak
Language: English
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spelling my.unimas.ir.271072021-04-23T00:39:48Z http://ir.unimas.my/id/eprint/27107/ Sequencing and characterization of complete mitogenome DNA for Rasbora myersi (Cypriniformes: Cyprinidae: Rasbora) and its evolutionary significance Chung, Hui Hui Whye, Leonard Kit Lim Roja, Jill Sela Cynthia Keranti, Anak Kamar Liaob, Yunshi Lam, Tommy Tsan-Yuk Chong, Yee Ling Q Science (General) QH Natural history The Seluang fish (Rasbora myersi) is a small ray-finned fish categorized under the genus Rasbora in the Cyprinidae family. In this study, the complete mitogenome sequence of R. myersi was sequenced using two primer pairs targeting overlapping regions. The mitogenome is 16,581 bp in length, encompassing 22 transfer RNA genes, 13 protein-coding genes, two ribosomal RNA genes and a putative control region. Identical gene organisation was observed between this species and other genus counterparts. The heavy strand accommodates 28 genes while the light strand houses the other nine genes. Most protein-coding genes utilize ATG as start codon, excluding COI gene, which employs GTG instead. The central conserved sequence blocks (CSB-F, CSB-E and CSB-D), variable sequence blocks (CSB-3, CSB-2 and CSB-1) as well as the terminal associated sequence (TAS) are conserved within the control region. The R. myersi formed a trio with R. borapetensis and R. argyrotaenia in a moderately strong clade with bootstrap value of 86. This work acts as essential gateway towards further molecular evolution and population genetics studies of the Rasbora genus in future. Elsevier Ltd. 2019-09-02 Article PeerReviewed text en http://ir.unimas.my/id/eprint/27107/1/Leonard%20Whye%20Kit%20Lima.pdf Chung, Hui Hui and Whye, Leonard Kit Lim and Roja, Jill Sela and Cynthia Keranti, Anak Kamar and Liaob, Yunshi and Lam, Tommy Tsan-Yuk and Chong, Yee Ling (2019) Sequencing and characterization of complete mitogenome DNA for Rasbora myersi (Cypriniformes: Cyprinidae: Rasbora) and its evolutionary significance. Gene Reports, 17 (2019). pp. 1-6. ISSN 2452-0144 https://www.sciencedirect.com/science/article/pii/S2452014419301414?dgcid=author#ac0005 DOI:org/10.1016/j.genrep.2019.100499
institution Universiti Malaysia Sarawak
building Centre for Academic Information Services (CAIS)
collection Institutional Repository
continent Asia
country Malaysia
content_provider Universiti Malaysia Sarawak
content_source UNIMAS Institutional Repository
url_provider http://ir.unimas.my/
language English
topic Q Science (General)
QH Natural history
spellingShingle Q Science (General)
QH Natural history
Chung, Hui Hui
Whye, Leonard Kit Lim
Roja, Jill Sela
Cynthia Keranti, Anak Kamar
Liaob, Yunshi
Lam, Tommy Tsan-Yuk
Chong, Yee Ling
Sequencing and characterization of complete mitogenome DNA for Rasbora myersi (Cypriniformes: Cyprinidae: Rasbora) and its evolutionary significance
description The Seluang fish (Rasbora myersi) is a small ray-finned fish categorized under the genus Rasbora in the Cyprinidae family. In this study, the complete mitogenome sequence of R. myersi was sequenced using two primer pairs targeting overlapping regions. The mitogenome is 16,581 bp in length, encompassing 22 transfer RNA genes, 13 protein-coding genes, two ribosomal RNA genes and a putative control region. Identical gene organisation was observed between this species and other genus counterparts. The heavy strand accommodates 28 genes while the light strand houses the other nine genes. Most protein-coding genes utilize ATG as start codon, excluding COI gene, which employs GTG instead. The central conserved sequence blocks (CSB-F, CSB-E and CSB-D), variable sequence blocks (CSB-3, CSB-2 and CSB-1) as well as the terminal associated sequence (TAS) are conserved within the control region. The R. myersi formed a trio with R. borapetensis and R. argyrotaenia in a moderately strong clade with bootstrap value of 86. This work acts as essential gateway towards further molecular evolution and population genetics studies of the Rasbora genus in future.
format Article
author Chung, Hui Hui
Whye, Leonard Kit Lim
Roja, Jill Sela
Cynthia Keranti, Anak Kamar
Liaob, Yunshi
Lam, Tommy Tsan-Yuk
Chong, Yee Ling
author_facet Chung, Hui Hui
Whye, Leonard Kit Lim
Roja, Jill Sela
Cynthia Keranti, Anak Kamar
Liaob, Yunshi
Lam, Tommy Tsan-Yuk
Chong, Yee Ling
author_sort Chung, Hui Hui
title Sequencing and characterization of complete mitogenome DNA for Rasbora myersi (Cypriniformes: Cyprinidae: Rasbora) and its evolutionary significance
title_short Sequencing and characterization of complete mitogenome DNA for Rasbora myersi (Cypriniformes: Cyprinidae: Rasbora) and its evolutionary significance
title_full Sequencing and characterization of complete mitogenome DNA for Rasbora myersi (Cypriniformes: Cyprinidae: Rasbora) and its evolutionary significance
title_fullStr Sequencing and characterization of complete mitogenome DNA for Rasbora myersi (Cypriniformes: Cyprinidae: Rasbora) and its evolutionary significance
title_full_unstemmed Sequencing and characterization of complete mitogenome DNA for Rasbora myersi (Cypriniformes: Cyprinidae: Rasbora) and its evolutionary significance
title_sort sequencing and characterization of complete mitogenome dna for rasbora myersi (cypriniformes: cyprinidae: rasbora) and its evolutionary significance
publisher Elsevier Ltd.
publishDate 2019
url http://ir.unimas.my/id/eprint/27107/1/Leonard%20Whye%20Kit%20Lima.pdf
http://ir.unimas.my/id/eprint/27107/
https://www.sciencedirect.com/science/article/pii/S2452014419301414?dgcid=author#ac0005
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