Qsar model for predicting neuraminidase inhibitors of influenza a viruses (H1N1) based on adaptive grasshopper optimization algorithm

• Main Authors: Algamal, Zakariya Y., Qasim, Maimoonah Khalid, Lee, Muhammad Hisyam, Mohammad Ali, Haithem Taha
• Format: Article
• Published: Taylor and Francis Ltd. 2020
• Subjects: Q Science (General)
• Online Access: http://eprints.utm.my/id/eprint/90315/; http://dx.doi.org/10.1080/1062936X.2020.1818616
• Institution: Universiti Teknologi Malaysia

High-dimensionality is one of the major problems which affect the quality of the quantitative structure–activity relationship (QSAR) modelling. Obtaining a reliable QSAR model with few descriptors is an essential procedure in chemometrics. The binary grasshopper optimization algorithm (BGOA) is a new meta-heuristic optimization algorithm, which has been used successfully to perform feature selection. In this paper, four new transfer functions were adapted to improve the exploration and exploitation capability of the BGOA in QSAR modelling of influenza A viruses (H1N1). The QSAR model with these new quadratic transfer functions was internally and externally validated based on MSEtrain, Y-randomization test, MSEtest, and the applicability domain (AD). The validation results indicate that the model is robust and not due to chance correlation. In addition, the results indicate that the descriptor selection and prediction performance of the QSAR model for training dataset outperform the other S-shaped and V-shaped transfer functions. QSAR model using quadratic transfer function shows the lowest MSEtrain. For the test dataset, proposed QSAR model shows lower value of MSEtest compared with the other methods, indicating its higher predictive ability. In conclusion, the results reveal that the proposed QSAR model is an efficient approach for modelling high-dimensional QSAR models and it is useful for the estimation of IC50 values of neuraminidase inhibitors that have not been experimentally tested.