QCKer: An x86-AVX/AVX2 implementation of Q-gram counting filter for DNA sequence alignment
The paper presents the implementation of the q-gram counting filter using x86-AVX/AVX2 SIMD instructions. There are three novel findings during the course of the research work. First, to eliminate inconsistency between the theoretical and experimental result, synthetic reads are generated using DNA...
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| Main Authors: | , , , |
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| Format: | text |
| Published: |
Animo Repository
2019
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| Subjects: | |
| Online Access: | https://animorepository.dlsu.edu.ph/faculty_research/4037 |
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| Institution: | De La Salle University |