Systems approaches in molecular and cell biology: Making sense out of data; Providing meaning to models

Two very different research strategies and mathematical modeling cultures will be outlined: Bottom-up theory-driven modeling and top-down data-driven modeling. The former encapsulates prior knowledge and hypotheses, while the latter extracts relevant co-variation patterns within and between large da...

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Bibliographic Details
Main Authors: Wolkenhauer, Olaf, Lao, Angelyn R., Omholt, Stig, Martens, Harald
Format: text
Published: Animo Repository 2009
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Online Access:https://animorepository.dlsu.edu.ph/faculty_research/7443
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Institution: De La Salle University
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Summary:Two very different research strategies and mathematical modeling cultures will be outlined: Bottom-up theory-driven modeling and top-down data-driven modeling. The former encapsulates prior knowledge and hypotheses, while the latter extracts relevant co-variation patterns within and between large data tables. The former relies on the scientist defining non-linear differential equations to model the dynamics of a process; the latter automatically finds and displays dominant latent structures by multivariate eigen-structure approximation. The two approaches have different strengths and weaknesses. Based on our experiences, we therefore here suggest a possible way for combining these approaches.