Deep Neural Network for Diagnosis of Bone Metastasis

The presence of bone metastasis represents an advanced stage of malignancy with a median survival of a few months and with limited appropriate therapies. The consequent structural bone destruction leads to considerable morbidity, including untreatable pain, fractures, functional impairment which imp...

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Main Authors: Magboo, Vincent Peter C, Abu, Patricia Angela R
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Published: Archīum Ateneo 2022
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Online Access:https://archium.ateneo.edu/discs-faculty-pubs/337
https://doi.org/10.1145/3520084.3520107
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spelling ph-ateneo-arc.discs-faculty-pubs-13372022-12-02T03:40:16Z Deep Neural Network for Diagnosis of Bone Metastasis Magboo, Vincent Peter C Abu, Patricia Angela R The presence of bone metastasis represents an advanced stage of malignancy with a median survival of a few months and with limited appropriate therapies. The consequent structural bone destruction leads to considerable morbidity, including untreatable pain, fractures, functional impairment which impact on the patient's quality of life. Hence, it is important to make an early diagnosis of bone metastasis to provide an accurate patient's treatment plan to improve overall survival rates and/or quality of life. The aim of this study is to develop a deep learning model using a convolutional neural network to assess the presence of bone metastasis from bone scintigram dataset of a local medical institution. The creation of the network architecture was made using an exploratory process combined with bibliographic search. Several experiments were made to determine optimum combination of parameters (input pixel size, dropout rates, batch size, and number of dense nodes). The model was also compared to the pre-trained architecture used in medical image classification reported in the literature: (1) VGG16, (2) ResNet50, (3) DenseNet121, and (4) InceptionV3. Results showed our base CNN model with good metric performance of 83.97% accuracy, 75.55% precision, 70.83% recall, 73.11% F1 score, and 89.81 % specificity. Our base CNN model outperformed VGG16, InceptionV3 and ResNet50. DenseNet121 showed the higher accuracy and precision results for this dataset, but our base CNN obtained better recall score. Our study showed promising results which could be integrated in the clinical routine workflow. The study has the potential to enhance cancer metastasis detection and monitoring. 2022-01-01T08:00:00Z text https://archium.ateneo.edu/discs-faculty-pubs/337 https://doi.org/10.1145/3520084.3520107 Department of Information Systems & Computer Science Faculty Publications Archīum Ateneo Computer aided diagnosis Convolution Convolutional neural networks Deep neural networks Diseases Medical imaging Network architecture Pathology Patient treatment Bone destruction Bone metastasis Bone scintigram CNN models Convolutional neural network Early diagnosis Images classification Median survival Quality of life Treatment plans Image classification Biomedical Computer Engineering Electrical and Computer Engineering Engineering Medicine and Health Sciences Neoplasms Oncology
institution Ateneo De Manila University
building Ateneo De Manila University Library
continent Asia
country Philippines
Philippines
content_provider Ateneo De Manila University Library
collection archium.Ateneo Institutional Repository
topic Computer aided diagnosis
Convolution
Convolutional neural networks
Deep neural networks
Diseases
Medical imaging
Network architecture
Pathology
Patient treatment
Bone destruction
Bone metastasis
Bone scintigram
CNN models
Convolutional neural network
Early diagnosis
Images classification
Median survival
Quality of life
Treatment plans
Image classification
Biomedical
Computer Engineering
Electrical and Computer Engineering
Engineering
Medicine and Health Sciences
Neoplasms
Oncology
spellingShingle Computer aided diagnosis
Convolution
Convolutional neural networks
Deep neural networks
Diseases
Medical imaging
Network architecture
Pathology
Patient treatment
Bone destruction
Bone metastasis
Bone scintigram
CNN models
Convolutional neural network
Early diagnosis
Images classification
Median survival
Quality of life
Treatment plans
Image classification
Biomedical
Computer Engineering
Electrical and Computer Engineering
Engineering
Medicine and Health Sciences
Neoplasms
Oncology
Magboo, Vincent Peter C
Abu, Patricia Angela R
Deep Neural Network for Diagnosis of Bone Metastasis
description The presence of bone metastasis represents an advanced stage of malignancy with a median survival of a few months and with limited appropriate therapies. The consequent structural bone destruction leads to considerable morbidity, including untreatable pain, fractures, functional impairment which impact on the patient's quality of life. Hence, it is important to make an early diagnosis of bone metastasis to provide an accurate patient's treatment plan to improve overall survival rates and/or quality of life. The aim of this study is to develop a deep learning model using a convolutional neural network to assess the presence of bone metastasis from bone scintigram dataset of a local medical institution. The creation of the network architecture was made using an exploratory process combined with bibliographic search. Several experiments were made to determine optimum combination of parameters (input pixel size, dropout rates, batch size, and number of dense nodes). The model was also compared to the pre-trained architecture used in medical image classification reported in the literature: (1) VGG16, (2) ResNet50, (3) DenseNet121, and (4) InceptionV3. Results showed our base CNN model with good metric performance of 83.97% accuracy, 75.55% precision, 70.83% recall, 73.11% F1 score, and 89.81 % specificity. Our base CNN model outperformed VGG16, InceptionV3 and ResNet50. DenseNet121 showed the higher accuracy and precision results for this dataset, but our base CNN obtained better recall score. Our study showed promising results which could be integrated in the clinical routine workflow. The study has the potential to enhance cancer metastasis detection and monitoring.
format text
author Magboo, Vincent Peter C
Abu, Patricia Angela R
author_facet Magboo, Vincent Peter C
Abu, Patricia Angela R
author_sort Magboo, Vincent Peter C
title Deep Neural Network for Diagnosis of Bone Metastasis
title_short Deep Neural Network for Diagnosis of Bone Metastasis
title_full Deep Neural Network for Diagnosis of Bone Metastasis
title_fullStr Deep Neural Network for Diagnosis of Bone Metastasis
title_full_unstemmed Deep Neural Network for Diagnosis of Bone Metastasis
title_sort deep neural network for diagnosis of bone metastasis
publisher Archīum Ateneo
publishDate 2022
url https://archium.ateneo.edu/discs-faculty-pubs/337
https://doi.org/10.1145/3520084.3520107
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