Complete genome sequence of the cyanophage S-PRM1 isolated from Singapore coastal waters
Here, we report the genomic sequence and comparative analysis of the cyanophage S-PRM1 which was recently isolated from Singapore coastal waters using Synechococcus sp. strain WH7803. The genome of 144,311 bp was sequenced using a combination of Illumina and Oxford Nanopore technologies. The calcula...
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sg-ntu-dr.10356-1401232023-02-28T16:39:47Z Complete genome sequence of the cyanophage S-PRM1 isolated from Singapore coastal waters Chénard, Caroline Kolundžija, Sandra Lauro, Federico M. Asian School of the Environment Singapore Centre for Environmental Life Sciences and Engineering Science::Biological sciences Genome Sequence Cyanophage Here, we report the genomic sequence and comparative analysis of the cyanophage S-PRM1 which was recently isolated from Singapore coastal waters using Synechococcus sp. strain WH7803. The genome of 144,311 bp was sequenced using a combination of Illumina and Oxford Nanopore technologies. The calculated OrthoANI (Average Nucleotide Identity by Orthology) values of S-PRM1 were between 65.24% and 89.39% when compared with previously sequenced cyanomyoviruses with the highest identity with cyanophage S-CAM9. Auxiliary metabolic genes (AMGs) involved in photosynthesis, carbon metabolism, phosphate acquisition, DNA biosynthesis were found in the genome of S-PRM1. NRF (Natl Research Foundation, S’pore) Accepted version 2020-05-26T08:51:38Z 2020-05-26T08:51:38Z 2018 Journal Article Chénard, C., Kolundžija, S., & Lauro, F. M. (2019). Complete genome sequence of the cyanophage S-PRM1 isolated from Singapore coastal waters. Marine Genomics, 43, 58-60. doi:10.1016/j.margen.2018.08.005 1874-7787 https://hdl.handle.net/10356/140123 10.1016/j.margen.2018.08.005 2-s2.0-85054140159 43 58 60 en Marine Genomics © 2018 Elsevier B.V. All rights reserved. This paper was published in Marine Genomics and is made available with permission of Elsevier B.V. application/pdf |
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Science::Biological sciences Genome Sequence Cyanophage Chénard, Caroline Kolundžija, Sandra Lauro, Federico M. Complete genome sequence of the cyanophage S-PRM1 isolated from Singapore coastal waters |
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Here, we report the genomic sequence and comparative analysis of the cyanophage S-PRM1 which was recently isolated from Singapore coastal waters using Synechococcus sp. strain WH7803. The genome of 144,311 bp was sequenced using a combination of Illumina and Oxford Nanopore technologies. The calculated OrthoANI (Average Nucleotide Identity by Orthology) values of S-PRM1 were between 65.24% and 89.39% when compared with previously sequenced cyanomyoviruses with the highest identity with cyanophage S-CAM9. Auxiliary metabolic genes (AMGs) involved in photosynthesis, carbon metabolism, phosphate acquisition, DNA biosynthesis were found in the genome of S-PRM1. |
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Asian School of the Environment |
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Asian School of the Environment Chénard, Caroline Kolundžija, Sandra Lauro, Federico M. |
format |
Article |
author |
Chénard, Caroline Kolundžija, Sandra Lauro, Federico M. |
author_sort |
Chénard, Caroline |
title |
Complete genome sequence of the cyanophage S-PRM1 isolated from Singapore coastal waters |
title_short |
Complete genome sequence of the cyanophage S-PRM1 isolated from Singapore coastal waters |
title_full |
Complete genome sequence of the cyanophage S-PRM1 isolated from Singapore coastal waters |
title_fullStr |
Complete genome sequence of the cyanophage S-PRM1 isolated from Singapore coastal waters |
title_full_unstemmed |
Complete genome sequence of the cyanophage S-PRM1 isolated from Singapore coastal waters |
title_sort |
complete genome sequence of the cyanophage s-prm1 isolated from singapore coastal waters |
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2020 |
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https://hdl.handle.net/10356/140123 |
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1759853499552628736 |