Code design for random-access in DNA-based storage system
Recently, DNA-based data storage has attracted much attention due to its inherent extreme information density and preservation longevity. However, it exists with its challenges that impede its practical usage. The primer design is able to address these challenges while posing another problem which i...
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sg-ntu-dr.10356-1417042023-07-07T18:50:54Z Code design for random-access in DNA-based storage system Goenawan, Wilson Erry Gunawan School of Electrical and Electronic Engineering egunawan@ntu.edu.sg Engineering::Electrical and electronic engineering Recently, DNA-based data storage has attracted much attention due to its inherent extreme information density and preservation longevity. However, it exists with its challenges that impede its practical usage. The primer design is able to address these challenges while posing another problem which is combinatorial constraints. For example, the similarity among codewords (or their complementary pairs) should be lower to control the undesired cross-hybridizations. Meanwhile, the codewords should satisfy certain biochemical constraints, i.e., balanced GC content, hairpin limit. In this project, the student will study the features of a DNA-based storage system and design a code to be used as the primers for implementing random-access in DNA data storage. Bachelor of Engineering (Electrical and Electronic Engineering) 2020-06-10T03:42:19Z 2020-06-10T03:42:19Z 2020 Final Year Project (FYP) https://hdl.handle.net/10356/141704 en application/pdf Nanyang Technological University |
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Engineering::Electrical and electronic engineering Goenawan, Wilson Code design for random-access in DNA-based storage system |
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Recently, DNA-based data storage has attracted much attention due to its inherent extreme information density and preservation longevity. However, it exists with its challenges that impede its practical usage. The primer design is able to address these challenges while posing another problem which is combinatorial constraints. For example, the similarity among codewords (or their complementary pairs) should be lower to control the undesired cross-hybridizations. Meanwhile, the codewords should satisfy certain biochemical constraints, i.e., balanced GC content, hairpin limit. In this project, the student will study the features of a DNA-based storage system and design a code to be used as the primers for implementing random-access in DNA data storage. |
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Erry Gunawan |
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Erry Gunawan Goenawan, Wilson |
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Final Year Project |
author |
Goenawan, Wilson |
author_sort |
Goenawan, Wilson |
title |
Code design for random-access in DNA-based storage system |
title_short |
Code design for random-access in DNA-based storage system |
title_full |
Code design for random-access in DNA-based storage system |
title_fullStr |
Code design for random-access in DNA-based storage system |
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Code design for random-access in DNA-based storage system |
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code design for random-access in dna-based storage system |
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Nanyang Technological University |
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2020 |
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https://hdl.handle.net/10356/141704 |
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1772825707821400064 |