Code design for random-access in DNA-based storage system

Recently, DNA-based data storage has attracted much attention due to its inherent extreme information density and preservation longevity. However, it exists with its challenges that impede its practical usage. The primer design is able to address these challenges while posing another problem which i...

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Main Author: Goenawan, Wilson
Other Authors: Erry Gunawan
Format: Final Year Project
Language:English
Published: Nanyang Technological University 2020
Subjects:
Online Access:https://hdl.handle.net/10356/141704
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Institution: Nanyang Technological University
Language: English
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spelling sg-ntu-dr.10356-1417042023-07-07T18:50:54Z Code design for random-access in DNA-based storage system Goenawan, Wilson Erry Gunawan School of Electrical and Electronic Engineering egunawan@ntu.edu.sg Engineering::Electrical and electronic engineering Recently, DNA-based data storage has attracted much attention due to its inherent extreme information density and preservation longevity. However, it exists with its challenges that impede its practical usage. The primer design is able to address these challenges while posing another problem which is combinatorial constraints. For example, the similarity among codewords (or their complementary pairs) should be lower to control the undesired cross-hybridizations. Meanwhile, the codewords should satisfy certain biochemical constraints, i.e., balanced GC content, hairpin limit. In this project, the student will study the features of a DNA-based storage system and design a code to be used as the primers for implementing random-access in DNA data storage. Bachelor of Engineering (Electrical and Electronic Engineering) 2020-06-10T03:42:19Z 2020-06-10T03:42:19Z 2020 Final Year Project (FYP) https://hdl.handle.net/10356/141704 en application/pdf Nanyang Technological University
institution Nanyang Technological University
building NTU Library
continent Asia
country Singapore
Singapore
content_provider NTU Library
collection DR-NTU
language English
topic Engineering::Electrical and electronic engineering
spellingShingle Engineering::Electrical and electronic engineering
Goenawan, Wilson
Code design for random-access in DNA-based storage system
description Recently, DNA-based data storage has attracted much attention due to its inherent extreme information density and preservation longevity. However, it exists with its challenges that impede its practical usage. The primer design is able to address these challenges while posing another problem which is combinatorial constraints. For example, the similarity among codewords (or their complementary pairs) should be lower to control the undesired cross-hybridizations. Meanwhile, the codewords should satisfy certain biochemical constraints, i.e., balanced GC content, hairpin limit. In this project, the student will study the features of a DNA-based storage system and design a code to be used as the primers for implementing random-access in DNA data storage.
author2 Erry Gunawan
author_facet Erry Gunawan
Goenawan, Wilson
format Final Year Project
author Goenawan, Wilson
author_sort Goenawan, Wilson
title Code design for random-access in DNA-based storage system
title_short Code design for random-access in DNA-based storage system
title_full Code design for random-access in DNA-based storage system
title_fullStr Code design for random-access in DNA-based storage system
title_full_unstemmed Code design for random-access in DNA-based storage system
title_sort code design for random-access in dna-based storage system
publisher Nanyang Technological University
publishDate 2020
url https://hdl.handle.net/10356/141704
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