Metagenomics-based proficiency test of smoked salmon spiked with a mock community

• Main Authors: Sala, Claudia, Mordhorst, Hanne, Grützke, Josephine, Brinkmann, Annika, Petersen, Thomas N., Poulsen, Casper, Cotter, Paul D., Crispie, Fiona, Ellis, Richard J., Castellani, Gastone, Amid, Clara, Hakhverdyan, Mikhayil, Guyader, Soizick Le, Manfreda, Gerardo, Mossong, Jöel, Nitsche, Andreas, Ragimbeau, Catherine, Schaeffer, Julien, Schlundt, Joergen, Tay, Moon Yue Feng, Aarestrup, Frank M., Hendriksen, Rene S., Pamp, Sünje Johanna, De Cesare, Alessandra
• Other Authors: School of Chemical and Biomedical Engineering
• Format: Article
• Language: English
• Published: 2021
• Subjects: Science::Biological sciences; Shotgun Metagenomics; Smoked Salmon
• Online Access: https://hdl.handle.net/10356/145884
• Institution: Nanyang Technological University

An inter-laboratory proficiency test was organized to assess the ability of participants to perform shotgun metagenomic sequencing of cold smoked salmon, experimentally spiked with a mock community composed of six bacteria, one parasite, one yeast, one DNA, and two RNA viruses. Each participant appl...