Machine learning-based pipeline for high accuracy bioparticle sizing

High accuracy measurement of size is essential in physical and biomedical sciences. Various sizing techniques have been widely used in sorting colloidal materials, analyzing bioparticles and monitoring the qualities of food and atmosphere. Most imaging-free methods such as light scattering measure t...

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Main Authors: Luo, Shaobo, Zhang, Yi, Nguyen, Kim Truc, Feng, Shilun, Shi, Yuzhi, Liu, Yang, Hutchinson, Paul, Chierchia, Giovanni, Talbot, Hugues, Bourouina, Tarik, Jiang, Xudong, Liu, Ai Qun
Other Authors: School of Electrical and Electronic Engineering
Format: Article
Language:English
Published: 2021
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Online Access:https://hdl.handle.net/10356/151479
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Institution: Nanyang Technological University
Language: English
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spelling sg-ntu-dr.10356-1514792021-06-18T09:10:20Z Machine learning-based pipeline for high accuracy bioparticle sizing Luo, Shaobo Zhang, Yi Nguyen, Kim Truc Feng, Shilun Shi, Yuzhi Liu, Yang Hutchinson, Paul Chierchia, Giovanni Talbot, Hugues Bourouina, Tarik Jiang, Xudong Liu, Ai Qun School of Electrical and Electronic Engineering School of Mechanical and Aerospace Engineering Nanyang Environment and Water Research Institute Engineering::Electrical and electronic engineering Optofluidics CMOS High accuracy measurement of size is essential in physical and biomedical sciences. Various sizing techniques have been widely used in sorting colloidal materials, analyzing bioparticles and monitoring the qualities of food and atmosphere. Most imaging-free methods such as light scattering measure the averaged size of particles and have difficulties in determining non-spherical particles. Imaging acquisition using camera is capable of observing individual nanoparticles in real time, but the accuracy is compromised by the image defocusing and instrumental calibration. In this work, a machine learning-based pipeline is developed to facilitate a high accuracy imaging-based particle sizing. The pipeline consists of an image segmentation module for cell identification and a machine learning model for accurate pixel-to-size conversion. The results manifest a significantly improved accuracy, showing great potential for a wide range of applications in environmental sensing, biomedical diagnostical, and material characterization. Ministry of Education (MOE) National Research Foundation (NRF) Published version This research was funded by the Singapore National Research Foundation under the Competitive Research Program (NRF-CRP13-2014-01), and Ministry of Education Tier 1 RG39/19. 2021-06-18T09:10:20Z 2021-06-18T09:10:20Z 2020 Journal Article Luo, S., Zhang, Y., Nguyen, K. T., Feng, S., Shi, Y., Liu, Y., Hutchinson, P., Chierchia, G., Talbot, H., Bourouina, T., Jiang, X. & Liu, A. Q. (2020). Machine learning-based pipeline for high accuracy bioparticle sizing. Micromachines, 11(12), 1-12. https://dx.doi.org/10.3390/mi11121084 2072-666X https://hdl.handle.net/10356/151479 10.3390/mi11121084 33297515 2-s2.0-85099199209 12 11 1 12 en Micromachines © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). application/pdf
institution Nanyang Technological University
building NTU Library
continent Asia
country Singapore
Singapore
content_provider NTU Library
collection DR-NTU
language English
topic Engineering::Electrical and electronic engineering
Optofluidics
CMOS
spellingShingle Engineering::Electrical and electronic engineering
Optofluidics
CMOS
Luo, Shaobo
Zhang, Yi
Nguyen, Kim Truc
Feng, Shilun
Shi, Yuzhi
Liu, Yang
Hutchinson, Paul
Chierchia, Giovanni
Talbot, Hugues
Bourouina, Tarik
Jiang, Xudong
Liu, Ai Qun
Machine learning-based pipeline for high accuracy bioparticle sizing
description High accuracy measurement of size is essential in physical and biomedical sciences. Various sizing techniques have been widely used in sorting colloidal materials, analyzing bioparticles and monitoring the qualities of food and atmosphere. Most imaging-free methods such as light scattering measure the averaged size of particles and have difficulties in determining non-spherical particles. Imaging acquisition using camera is capable of observing individual nanoparticles in real time, but the accuracy is compromised by the image defocusing and instrumental calibration. In this work, a machine learning-based pipeline is developed to facilitate a high accuracy imaging-based particle sizing. The pipeline consists of an image segmentation module for cell identification and a machine learning model for accurate pixel-to-size conversion. The results manifest a significantly improved accuracy, showing great potential for a wide range of applications in environmental sensing, biomedical diagnostical, and material characterization.
author2 School of Electrical and Electronic Engineering
author_facet School of Electrical and Electronic Engineering
Luo, Shaobo
Zhang, Yi
Nguyen, Kim Truc
Feng, Shilun
Shi, Yuzhi
Liu, Yang
Hutchinson, Paul
Chierchia, Giovanni
Talbot, Hugues
Bourouina, Tarik
Jiang, Xudong
Liu, Ai Qun
format Article
author Luo, Shaobo
Zhang, Yi
Nguyen, Kim Truc
Feng, Shilun
Shi, Yuzhi
Liu, Yang
Hutchinson, Paul
Chierchia, Giovanni
Talbot, Hugues
Bourouina, Tarik
Jiang, Xudong
Liu, Ai Qun
author_sort Luo, Shaobo
title Machine learning-based pipeline for high accuracy bioparticle sizing
title_short Machine learning-based pipeline for high accuracy bioparticle sizing
title_full Machine learning-based pipeline for high accuracy bioparticle sizing
title_fullStr Machine learning-based pipeline for high accuracy bioparticle sizing
title_full_unstemmed Machine learning-based pipeline for high accuracy bioparticle sizing
title_sort machine learning-based pipeline for high accuracy bioparticle sizing
publishDate 2021
url https://hdl.handle.net/10356/151479
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