A convolutional neural network-based auto-segmentation pipeline for breast cancer imaging

Medical imaging is crucial for the detection and diagnosis of breast cancer. Artificial intelligence and computer vision have rapidly become popular in medical image analyses thanks to technological advancements. To improve the effectiveness and efficiency of medical diagnosis and treatment, signifi...

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Main Authors: Leow, Lucas Jian Hoong, Azam, Abu Bakr, Tan, Hong Qi, Nei, Wen Long, Cao, Qi, Huang, Lihui, Xie, Yuan, Cai, Yiyu
Other Authors: School of Mechanical and Aerospace Engineering
Format: Article
Language:English
Published: 2024
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Online Access:https://hdl.handle.net/10356/174774
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Institution: Nanyang Technological University
Language: English
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spelling sg-ntu-dr.10356-1747742024-04-13T16:49:09Z A convolutional neural network-based auto-segmentation pipeline for breast cancer imaging Leow, Lucas Jian Hoong Azam, Abu Bakr Tan, Hong Qi Nei, Wen Long Cao, Qi Huang, Lihui Xie, Yuan Cai, Yiyu School of Mechanical and Aerospace Engineering Engineering Convolutional neural network Breast cancer Medical imaging is crucial for the detection and diagnosis of breast cancer. Artificial intelligence and computer vision have rapidly become popular in medical image analyses thanks to technological advancements. To improve the effectiveness and efficiency of medical diagnosis and treatment, significant efforts have been made in the literature on medical image processing, segmentation, volumetric analysis, and prediction. This paper is interested in the development of a prediction pipeline for breast cancer studies based on 3D computed tomography (CT) scans. Several algorithms were designed and integrated to classify the suitability of the CT slices. The selected slices from patients were then further processed in the pipeline. This was followed by data generalization and volume segmentation to reduce the computation complexity. The selected input data were fed into a 3D U-Net architecture in the pipeline for analysis and volumetric predictions of cancer tumors. Three types of U-Net models were designed and compared. The experimental results show that Model 1 of U-Net obtained the highest accuracy at 91.44% with the highest memory usage; Model 2 had the lowest memory usage with the lowest accuracy at 85.18%; and Model 3 achieved a balanced performance in accuracy and memory usage, which is a more suitable configuration for the developed pipeline. National Medical Research Council (NMRC) Published version This project is supported by Duke-NUS Oncology Academic Program Goh Foundation Proton Research Program (08/FY2021/EX/12-A42), and the National Medical Research Council Fellowship (NMRC/MOH-000166-00). 2024-04-09T08:13:03Z 2024-04-09T08:13:03Z 2024 Journal Article Leow, L. J. H., Azam, A. B., Tan, H. Q., Nei, W. L., Cao, Q., Huang, L., Xie, Y. & Cai, Y. (2024). A convolutional neural network-based auto-segmentation pipeline for breast cancer imaging. Mathematics, 12(4), 616-. https://dx.doi.org/10.3390/math12040616 2227-7390 https://hdl.handle.net/10356/174774 10.3390/math12040616 2-s2.0-85187272128 4 12 616 en 08/FY2021/EX/12-A42 NMRC/MOH-000166-00 Mathematics © 2024 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/). application/pdf
institution Nanyang Technological University
building NTU Library
continent Asia
country Singapore
Singapore
content_provider NTU Library
collection DR-NTU
language English
topic Engineering
Convolutional neural network
Breast cancer
spellingShingle Engineering
Convolutional neural network
Breast cancer
Leow, Lucas Jian Hoong
Azam, Abu Bakr
Tan, Hong Qi
Nei, Wen Long
Cao, Qi
Huang, Lihui
Xie, Yuan
Cai, Yiyu
A convolutional neural network-based auto-segmentation pipeline for breast cancer imaging
description Medical imaging is crucial for the detection and diagnosis of breast cancer. Artificial intelligence and computer vision have rapidly become popular in medical image analyses thanks to technological advancements. To improve the effectiveness and efficiency of medical diagnosis and treatment, significant efforts have been made in the literature on medical image processing, segmentation, volumetric analysis, and prediction. This paper is interested in the development of a prediction pipeline for breast cancer studies based on 3D computed tomography (CT) scans. Several algorithms were designed and integrated to classify the suitability of the CT slices. The selected slices from patients were then further processed in the pipeline. This was followed by data generalization and volume segmentation to reduce the computation complexity. The selected input data were fed into a 3D U-Net architecture in the pipeline for analysis and volumetric predictions of cancer tumors. Three types of U-Net models were designed and compared. The experimental results show that Model 1 of U-Net obtained the highest accuracy at 91.44% with the highest memory usage; Model 2 had the lowest memory usage with the lowest accuracy at 85.18%; and Model 3 achieved a balanced performance in accuracy and memory usage, which is a more suitable configuration for the developed pipeline.
author2 School of Mechanical and Aerospace Engineering
author_facet School of Mechanical and Aerospace Engineering
Leow, Lucas Jian Hoong
Azam, Abu Bakr
Tan, Hong Qi
Nei, Wen Long
Cao, Qi
Huang, Lihui
Xie, Yuan
Cai, Yiyu
format Article
author Leow, Lucas Jian Hoong
Azam, Abu Bakr
Tan, Hong Qi
Nei, Wen Long
Cao, Qi
Huang, Lihui
Xie, Yuan
Cai, Yiyu
author_sort Leow, Lucas Jian Hoong
title A convolutional neural network-based auto-segmentation pipeline for breast cancer imaging
title_short A convolutional neural network-based auto-segmentation pipeline for breast cancer imaging
title_full A convolutional neural network-based auto-segmentation pipeline for breast cancer imaging
title_fullStr A convolutional neural network-based auto-segmentation pipeline for breast cancer imaging
title_full_unstemmed A convolutional neural network-based auto-segmentation pipeline for breast cancer imaging
title_sort convolutional neural network-based auto-segmentation pipeline for breast cancer imaging
publishDate 2024
url https://hdl.handle.net/10356/174774
_version_ 1800916298690985984