Self-supervised Self2Self denoising strategy for OCT speckle reduction with a single noisy image

Optical coherence tomography (OCT) inevitably suffers from the influence of speckles originating from multiple scattered photons owing to its low-coherence interferometry property. Although various deep learning schemes have been proposed for OCT despeckling, they typically suffer from the requireme...

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Main Authors: Ge, Chenkun, Yu, Xiaojun, Yuan, Miao, Fan, Zeming, Chen, Jinna, Shum, Perry Ping, Liu, Linbo
Other Authors: School of Electrical and Electronic Engineering
Format: Article
Language:English
Published: 2024
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Online Access:https://hdl.handle.net/10356/178489
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Institution: Nanyang Technological University
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spelling sg-ntu-dr.10356-1784892024-06-28T15:39:36Z Self-supervised Self2Self denoising strategy for OCT speckle reduction with a single noisy image Ge, Chenkun Yu, Xiaojun Yuan, Miao Fan, Zeming Chen, Jinna Shum, Perry Ping Liu, Linbo School of Electrical and Electronic Engineering Engineering Interferometry Optical coherence tomography Optical coherence tomography (OCT) inevitably suffers from the influence of speckles originating from multiple scattered photons owing to its low-coherence interferometry property. Although various deep learning schemes have been proposed for OCT despeckling, they typically suffer from the requirement for ground-truth images, which are difficult to collect in clinical practice. To alleviate the influences of speckles without requiring ground-truth images, this paper presents a self-supervised deep learning scheme, namely, Self2Self strategy (S2Snet), for OCT despeckling using a single noisy image. Specifically, in this study, the main deep learning architecture is the Self2Self network, with its partial convolution being updated with a gated convolution layer. Specifically, both the input images and their Bernoulli sampling instances are adopted as network input first, and then, a devised loss function is integrated into the network to remove the background noise. Finally, the denoised output is estimated using the average of multiple predicted outputs. Experiments with various OCT datasets are conducted to verify the effectiveness of the proposed S2Snet scheme. Results compared with those of the existing methods demonstrate that S2Snet not only outperforms those existing self-supervised deep learning methods but also achieves better performances than those non-deep learning ones in different cases. Specifically, S2Snet achieves an improvement of 3.41% and 2.37% for PSNR and SSIM, respectively, as compared to the original Self2Self network, while such improvements become 19.9% and 22.7% as compared with the well-known non-deep learning NWSR method. Ministry of Education (MOE) National Medical Research Council (NMRC) Published version National Natural Science Foundation of China (62220106006); the Guangdong Basic and Applied Basic Research Foundation (2021B1515120013); Northwestern Polytechnical University Postgraduate Practice Innovation Fund (PF2023015); the Singapore Ministry of Health’s National Medical Research Council under its Open Fund Individual Research Grant (MOH-OFIRG19may-0009); Ministry of Education - Singapore under its Academic Research Fund Tier 1 (RG35/22) and Academic Research Funding Tier 2 (MOE-T2EP30120-0001). 2024-06-24T05:22:30Z 2024-06-24T05:22:30Z 2024 Journal Article Ge, C., Yu, X., Yuan, M., Fan, Z., Chen, J., Shum, P. P. & Liu, L. (2024). Self-supervised Self2Self denoising strategy for OCT speckle reduction with a single noisy image. Biomedical Optics Express, 15(2), 1233-1252. https://dx.doi.org/10.1364/BOE.515520 2156-7085 https://hdl.handle.net/10356/178489 10.1364/BOE.515520 38404302 2-s2.0-85184142457 2 15 1233 1252 en MOH-OFIRG19may-0009 RG35/22 MOE-T2EP30120-0001 Biomedical Optics Express © 2024 Optica Publishing Group under the terms of the Optica Open Access Publishing Agreement. application/pdf
institution Nanyang Technological University
building NTU Library
continent Asia
country Singapore
Singapore
content_provider NTU Library
collection DR-NTU
language English
topic Engineering
Interferometry
Optical coherence tomography
spellingShingle Engineering
Interferometry
Optical coherence tomography
Ge, Chenkun
Yu, Xiaojun
Yuan, Miao
Fan, Zeming
Chen, Jinna
Shum, Perry Ping
Liu, Linbo
Self-supervised Self2Self denoising strategy for OCT speckle reduction with a single noisy image
description Optical coherence tomography (OCT) inevitably suffers from the influence of speckles originating from multiple scattered photons owing to its low-coherence interferometry property. Although various deep learning schemes have been proposed for OCT despeckling, they typically suffer from the requirement for ground-truth images, which are difficult to collect in clinical practice. To alleviate the influences of speckles without requiring ground-truth images, this paper presents a self-supervised deep learning scheme, namely, Self2Self strategy (S2Snet), for OCT despeckling using a single noisy image. Specifically, in this study, the main deep learning architecture is the Self2Self network, with its partial convolution being updated with a gated convolution layer. Specifically, both the input images and their Bernoulli sampling instances are adopted as network input first, and then, a devised loss function is integrated into the network to remove the background noise. Finally, the denoised output is estimated using the average of multiple predicted outputs. Experiments with various OCT datasets are conducted to verify the effectiveness of the proposed S2Snet scheme. Results compared with those of the existing methods demonstrate that S2Snet not only outperforms those existing self-supervised deep learning methods but also achieves better performances than those non-deep learning ones in different cases. Specifically, S2Snet achieves an improvement of 3.41% and 2.37% for PSNR and SSIM, respectively, as compared to the original Self2Self network, while such improvements become 19.9% and 22.7% as compared with the well-known non-deep learning NWSR method.
author2 School of Electrical and Electronic Engineering
author_facet School of Electrical and Electronic Engineering
Ge, Chenkun
Yu, Xiaojun
Yuan, Miao
Fan, Zeming
Chen, Jinna
Shum, Perry Ping
Liu, Linbo
format Article
author Ge, Chenkun
Yu, Xiaojun
Yuan, Miao
Fan, Zeming
Chen, Jinna
Shum, Perry Ping
Liu, Linbo
author_sort Ge, Chenkun
title Self-supervised Self2Self denoising strategy for OCT speckle reduction with a single noisy image
title_short Self-supervised Self2Self denoising strategy for OCT speckle reduction with a single noisy image
title_full Self-supervised Self2Self denoising strategy for OCT speckle reduction with a single noisy image
title_fullStr Self-supervised Self2Self denoising strategy for OCT speckle reduction with a single noisy image
title_full_unstemmed Self-supervised Self2Self denoising strategy for OCT speckle reduction with a single noisy image
title_sort self-supervised self2self denoising strategy for oct speckle reduction with a single noisy image
publishDate 2024
url https://hdl.handle.net/10356/178489
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