Evolution-guided Bayesian optimization for constrained multi-objective optimization in self-driving labs

The development of automated high-throughput experimental platforms has enabled fast sampling of high-dimensional decision spaces. To reach target properties efficiently, these platforms are increasingly paired with intelligent experimental design. However, current optimizers show limitations in mai...

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Main Authors: Low, Andre Kai Yuan, Mekki-Berrada, Flore, Gupta, Abhishek, Ostudin, Aleksandr, Xie, Jiaxun, Vissol-Gaudin, Eleonore, Lim, Yee-Fun, Li, Qianxiao, Ong, Yew Soon, Khan, Saif A., Hippalgaonkar, Kedar
Other Authors: School of Materials Science and Engineering
Format: Article
Language:English
Published: 2024
Subjects:
Online Access:https://hdl.handle.net/10356/178838
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Institution: Nanyang Technological University
Language: English
id sg-ntu-dr.10356-178838
record_format dspace
institution Nanyang Technological University
building NTU Library
continent Asia
country Singapore
Singapore
content_provider NTU Library
collection DR-NTU
language English
topic Engineering
Bayesian optimization
Multi-objective problem
spellingShingle Engineering
Bayesian optimization
Multi-objective problem
Low, Andre Kai Yuan
Mekki-Berrada, Flore
Gupta, Abhishek
Ostudin, Aleksandr
Xie, Jiaxun
Vissol-Gaudin, Eleonore
Lim, Yee-Fun
Li, Qianxiao
Ong, Yew Soon
Khan, Saif A.
Hippalgaonkar, Kedar
Evolution-guided Bayesian optimization for constrained multi-objective optimization in self-driving labs
description The development of automated high-throughput experimental platforms has enabled fast sampling of high-dimensional decision spaces. To reach target properties efficiently, these platforms are increasingly paired with intelligent experimental design. However, current optimizers show limitations in maintaining sufficient exploration/exploitation balance for problems dealing with multiple conflicting objectives and complex constraints. Here, we devise an Evolution-Guided Bayesian Optimization (EGBO) algorithm that integrates selection pressure in parallel with a q-Noisy Expected Hypervolume Improvement (qNEHVI) optimizer; this not only solves for the Pareto Front (PF) efficiently but also achieves better coverage of the PF while limiting sampling in the infeasible space. The algorithm is developed together with a custom self-driving lab for seed-mediated silver nanoparticle synthesis, targeting 3 objectives (1) optical properties, (2) fast reaction, and (3) minimal seed usage alongside complex constraints. We demonstrate that, with appropriate constraint handling, EGBO performance improves upon state-of-the-art qNEHVI. Furthermore, across various synthetic multi-objective problems, EGBO shows significative hypervolume improvement, revealing the synergy between selection pressure and the qNEHVI optimizer. We also demonstrate EGBO’s good coverage of the PF as well as comparatively better ability to propose feasible solutions. We thus propose EGBO as a general framework for efficiently solving constrained multi-objective problems in high-throughput experimentation platforms.
author2 School of Materials Science and Engineering
author_facet School of Materials Science and Engineering
Low, Andre Kai Yuan
Mekki-Berrada, Flore
Gupta, Abhishek
Ostudin, Aleksandr
Xie, Jiaxun
Vissol-Gaudin, Eleonore
Lim, Yee-Fun
Li, Qianxiao
Ong, Yew Soon
Khan, Saif A.
Hippalgaonkar, Kedar
format Article
author Low, Andre Kai Yuan
Mekki-Berrada, Flore
Gupta, Abhishek
Ostudin, Aleksandr
Xie, Jiaxun
Vissol-Gaudin, Eleonore
Lim, Yee-Fun
Li, Qianxiao
Ong, Yew Soon
Khan, Saif A.
Hippalgaonkar, Kedar
author_sort Low, Andre Kai Yuan
title Evolution-guided Bayesian optimization for constrained multi-objective optimization in self-driving labs
title_short Evolution-guided Bayesian optimization for constrained multi-objective optimization in self-driving labs
title_full Evolution-guided Bayesian optimization for constrained multi-objective optimization in self-driving labs
title_fullStr Evolution-guided Bayesian optimization for constrained multi-objective optimization in self-driving labs
title_full_unstemmed Evolution-guided Bayesian optimization for constrained multi-objective optimization in self-driving labs
title_sort evolution-guided bayesian optimization for constrained multi-objective optimization in self-driving labs
publishDate 2024
url https://hdl.handle.net/10356/178838
_version_ 1806059813974573056
spelling sg-ntu-dr.10356-1788382024-07-12T15:44:30Z Evolution-guided Bayesian optimization for constrained multi-objective optimization in self-driving labs Low, Andre Kai Yuan Mekki-Berrada, Flore Gupta, Abhishek Ostudin, Aleksandr Xie, Jiaxun Vissol-Gaudin, Eleonore Lim, Yee-Fun Li, Qianxiao Ong, Yew Soon Khan, Saif A. Hippalgaonkar, Kedar School of Materials Science and Engineering School of Computer Science and Engineering Institute of Materials Research and Engineering, A*STAR Engineering Bayesian optimization Multi-objective problem The development of automated high-throughput experimental platforms has enabled fast sampling of high-dimensional decision spaces. To reach target properties efficiently, these platforms are increasingly paired with intelligent experimental design. However, current optimizers show limitations in maintaining sufficient exploration/exploitation balance for problems dealing with multiple conflicting objectives and complex constraints. Here, we devise an Evolution-Guided Bayesian Optimization (EGBO) algorithm that integrates selection pressure in parallel with a q-Noisy Expected Hypervolume Improvement (qNEHVI) optimizer; this not only solves for the Pareto Front (PF) efficiently but also achieves better coverage of the PF while limiting sampling in the infeasible space. The algorithm is developed together with a custom self-driving lab for seed-mediated silver nanoparticle synthesis, targeting 3 objectives (1) optical properties, (2) fast reaction, and (3) minimal seed usage alongside complex constraints. We demonstrate that, with appropriate constraint handling, EGBO performance improves upon state-of-the-art qNEHVI. Furthermore, across various synthetic multi-objective problems, EGBO shows significative hypervolume improvement, revealing the synergy between selection pressure and the qNEHVI optimizer. We also demonstrate EGBO’s good coverage of the PF as well as comparatively better ability to propose feasible solutions. We thus propose EGBO as a general framework for efficiently solving constrained multi-objective problems in high-throughput experimentation platforms. Agency for Science, Technology and Research (A*STAR) National Research Foundation (NRF) Published version The authors acknowledge funding from AME Programmatic Funds by the Agency for Science, Technology and Research under Grant No. A1898b0043 and No. A20G9b0135. KH also acknowledges funding from the National Research Foundation (NRF), Singapore under the NRF Fellowship (NRF- NRFF13-2021-0011). SAK and FMB also acknowledge funding from the 25th NRF CRP programme (NRF-CRP25- 2020RS-0002). QL also acknowledges support from the NRF fellowship (project No. NRF- NRFF13-2021-0005) and the Ministry of Education, Singapore, under its Research Centre of Excellence award to the Institute for Functional Intelligent Materials (I-FIM, project No. EDUNC33-18-279-V12). 2024-07-08T08:27:26Z 2024-07-08T08:27:26Z 2024 Journal Article Low, A. K. Y., Mekki-Berrada, F., Gupta, A., Ostudin, A., Xie, J., Vissol-Gaudin, E., Lim, Y., Li, Q., Ong, Y. S., Khan, S. A. & Hippalgaonkar, K. (2024). Evolution-guided Bayesian optimization for constrained multi-objective optimization in self-driving labs. Npj Computational Materials, 10(1), 104-. https://dx.doi.org/10.1038/s41524-024-01274-x 2057-3960 https://hdl.handle.net/10356/178838 10.1038/s41524-024-01274-x 2-s2.0-85192900741 1 10 104 en A1898b0043 A20G9b0135 NRF-NRFF13-2021-0011 npj Computational Materials © 2024 The Author(s). Open Access. This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. application/pdf