Digitalised prediction of blue pigment content from Spirulina platensis: next-generation microalgae bio-molecule detection

The motive of this study is to predict the concentration of C-phycocyanin (CPC) from Spirulina platensis by adapting several colour models along with machine learning (ML) and deep learning (DL) techniques. Initially, three different culture mediums such as Zarrouk, BG-11, and AF6 were compared, and...

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Main Authors: Chong, Roy Jun Wei, Khoo, Kuan Shiong, Chew, Kit Wayne, Ting, Huong-Yong, Iwamoto, Koji, Show, Pau Loke
Other Authors: School of Chemistry, Chemical Engineering and Biotechnology
Format: Article
Language:English
Published: 2024
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Online Access:https://hdl.handle.net/10356/180806
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Institution: Nanyang Technological University
Language: English
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spelling sg-ntu-dr.10356-1808062024-10-28T04:50:13Z Digitalised prediction of blue pigment content from Spirulina platensis: next-generation microalgae bio-molecule detection Chong, Roy Jun Wei Khoo, Kuan Shiong Chew, Kit Wayne Ting, Huong-Yong Iwamoto, Koji Show, Pau Loke School of Chemistry, Chemical Engineering and Biotechnology Medicine, Health and Life Sciences Spirulina platensis C-phycocyanin The motive of this study is to predict the concentration of C-phycocyanin (CPC) from Spirulina platensis by adapting several colour models along with machine learning (ML) and deep learning (DL) techniques. Initially, three different culture mediums such as Zarrouk, BG-11, and AF6 were compared, and the BG-11 medium was chosen due to its overall best biomass growth, least amount of chemical usage, and CPC production. The performance of the convolutional neural network (CNN) without the input parameters of ‘Abs’ and ‘Day’ results in a higher R2 of 0.7269 as compared to both support vector machine (SVM) and artificial neural network (ANN) with R2 of 0.2725 and 0.2552, respectively. The absence of regularisation techniques has caused the scenario of model overfitting, showing results of R2Train = 0.9891 and R2Val = 0.5170 (without image augmentation) and R2Train = 0.9710 and R2Val = 0.5521 (including 20 % dropout but without image augmentation). Meanwhile, both SVM and ANN models were observed to show significantly high accuracy when including extra parameters of ‘Abs’ and ‘Day’ as compared to the CNN model with R2 of 0.9903 and 0.9827, respectively. We aim to establish a high precision and real-time assessment of microalgae biomolecule intelligent system that requires low cost, less time consumption, and is widely applicable, addressing the challenges associated with conventional microalgae quantification and identification. Pau Loke Show would like to acknowledge the Khalifa University (FSU-2024-001) with project reference number 8474000580. One of the authors (Kuan Shiong Khoo) would like to gratefully acknowledge the work supported and financially funded by National Science and Technology Council, Taiwan (Project number: 112-2222-E-155-005) and Department of Chemical Engineering and Material Science, Yuan Ze University, Taiwan under New Faculty Research Start-Up Fund Scheme (Project no: 303014-1 and 303014-2). 2024-10-28T04:50:13Z 2024-10-28T04:50:13Z 2024 Journal Article Chong, R. J. W., Khoo, K. S., Chew, K. W., Ting, H., Iwamoto, K. & Show, P. L. (2024). Digitalised prediction of blue pigment content from Spirulina platensis: next-generation microalgae bio-molecule detection. Algal Research, 83, 103642-. https://dx.doi.org/10.1016/j.algal.2024.103642 2211-9264 https://hdl.handle.net/10356/180806 10.1016/j.algal.2024.103642 2-s2.0-85204741766 83 103642 en Algal Research © 2024 Published by Elsevier B.V. All rights reserved.
institution Nanyang Technological University
building NTU Library
continent Asia
country Singapore
Singapore
content_provider NTU Library
collection DR-NTU
language English
topic Medicine, Health and Life Sciences
Spirulina platensis
C-phycocyanin
spellingShingle Medicine, Health and Life Sciences
Spirulina platensis
C-phycocyanin
Chong, Roy Jun Wei
Khoo, Kuan Shiong
Chew, Kit Wayne
Ting, Huong-Yong
Iwamoto, Koji
Show, Pau Loke
Digitalised prediction of blue pigment content from Spirulina platensis: next-generation microalgae bio-molecule detection
description The motive of this study is to predict the concentration of C-phycocyanin (CPC) from Spirulina platensis by adapting several colour models along with machine learning (ML) and deep learning (DL) techniques. Initially, three different culture mediums such as Zarrouk, BG-11, and AF6 were compared, and the BG-11 medium was chosen due to its overall best biomass growth, least amount of chemical usage, and CPC production. The performance of the convolutional neural network (CNN) without the input parameters of ‘Abs’ and ‘Day’ results in a higher R2 of 0.7269 as compared to both support vector machine (SVM) and artificial neural network (ANN) with R2 of 0.2725 and 0.2552, respectively. The absence of regularisation techniques has caused the scenario of model overfitting, showing results of R2Train = 0.9891 and R2Val = 0.5170 (without image augmentation) and R2Train = 0.9710 and R2Val = 0.5521 (including 20 % dropout but without image augmentation). Meanwhile, both SVM and ANN models were observed to show significantly high accuracy when including extra parameters of ‘Abs’ and ‘Day’ as compared to the CNN model with R2 of 0.9903 and 0.9827, respectively. We aim to establish a high precision and real-time assessment of microalgae biomolecule intelligent system that requires low cost, less time consumption, and is widely applicable, addressing the challenges associated with conventional microalgae quantification and identification.
author2 School of Chemistry, Chemical Engineering and Biotechnology
author_facet School of Chemistry, Chemical Engineering and Biotechnology
Chong, Roy Jun Wei
Khoo, Kuan Shiong
Chew, Kit Wayne
Ting, Huong-Yong
Iwamoto, Koji
Show, Pau Loke
format Article
author Chong, Roy Jun Wei
Khoo, Kuan Shiong
Chew, Kit Wayne
Ting, Huong-Yong
Iwamoto, Koji
Show, Pau Loke
author_sort Chong, Roy Jun Wei
title Digitalised prediction of blue pigment content from Spirulina platensis: next-generation microalgae bio-molecule detection
title_short Digitalised prediction of blue pigment content from Spirulina platensis: next-generation microalgae bio-molecule detection
title_full Digitalised prediction of blue pigment content from Spirulina platensis: next-generation microalgae bio-molecule detection
title_fullStr Digitalised prediction of blue pigment content from Spirulina platensis: next-generation microalgae bio-molecule detection
title_full_unstemmed Digitalised prediction of blue pigment content from Spirulina platensis: next-generation microalgae bio-molecule detection
title_sort digitalised prediction of blue pigment content from spirulina platensis: next-generation microalgae bio-molecule detection
publishDate 2024
url https://hdl.handle.net/10356/180806
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