Systems biology analysis of plasmodium host parasite interactions.

Plasmodium Falciparum, is the main cause of the disease malaria which kills millions especially in the sub-Saharan region annually. This project (preliminary study) aims to annotate the many plasmodium gene with unknown functions using the guilt by association method. To achieve this aim, we perturb...

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Main Author: Wong, Lu Yi.
Other Authors: School of Biological Sciences
Format: Final Year Project
Language:English
Published: 2013
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Online Access:http://hdl.handle.net/10356/53803
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Institution: Nanyang Technological University
Language: English
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spelling sg-ntu-dr.10356-538032023-02-28T18:01:36Z Systems biology analysis of plasmodium host parasite interactions. Wong, Lu Yi. School of Biological Sciences Zbynek Bozdech DRNTU::Science::Biological sciences::Molecular biology Plasmodium Falciparum, is the main cause of the disease malaria which kills millions especially in the sub-Saharan region annually. This project (preliminary study) aims to annotate the many plasmodium gene with unknown functions using the guilt by association method. To achieve this aim, we perturb the parasite at trophozoite stage only (3D7 strain) with 400 compounds from the Malaria Box collection and perform microarray. The resulting 41 (out of 400) expression profiles profiles are used to generate a co expression network for further analysis. A previous study have shown chemical perturbation to produce relevant and reproducible gene profiles. If successful, this will validate the accuracy and feasibility of using drug perturbation together with microarrays to elucidate gene functions in a fast and comprehensible manner. The resultant network clusters show some biological relevance, especially the “invasion” cluster. Bachelor of Science in Biological Sciences 2013-06-07T06:52:34Z 2013-06-07T06:52:34Z 2013 2013 Final Year Project (FYP) http://hdl.handle.net/10356/53803 en Nanyang Technological University 43 p. application/pdf
institution Nanyang Technological University
building NTU Library
continent Asia
country Singapore
Singapore
content_provider NTU Library
collection DR-NTU
language English
topic DRNTU::Science::Biological sciences::Molecular biology
spellingShingle DRNTU::Science::Biological sciences::Molecular biology
Wong, Lu Yi.
Systems biology analysis of plasmodium host parasite interactions.
description Plasmodium Falciparum, is the main cause of the disease malaria which kills millions especially in the sub-Saharan region annually. This project (preliminary study) aims to annotate the many plasmodium gene with unknown functions using the guilt by association method. To achieve this aim, we perturb the parasite at trophozoite stage only (3D7 strain) with 400 compounds from the Malaria Box collection and perform microarray. The resulting 41 (out of 400) expression profiles profiles are used to generate a co expression network for further analysis. A previous study have shown chemical perturbation to produce relevant and reproducible gene profiles. If successful, this will validate the accuracy and feasibility of using drug perturbation together with microarrays to elucidate gene functions in a fast and comprehensible manner. The resultant network clusters show some biological relevance, especially the “invasion” cluster.
author2 School of Biological Sciences
author_facet School of Biological Sciences
Wong, Lu Yi.
format Final Year Project
author Wong, Lu Yi.
author_sort Wong, Lu Yi.
title Systems biology analysis of plasmodium host parasite interactions.
title_short Systems biology analysis of plasmodium host parasite interactions.
title_full Systems biology analysis of plasmodium host parasite interactions.
title_fullStr Systems biology analysis of plasmodium host parasite interactions.
title_full_unstemmed Systems biology analysis of plasmodium host parasite interactions.
title_sort systems biology analysis of plasmodium host parasite interactions.
publishDate 2013
url http://hdl.handle.net/10356/53803
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