Assemblathon 1: A competitive assessment of de novo short read assembly methods

10.1101/gr.126599.111

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Main Authors:	Earl, D., Bradnam, K., St. John, J., Darling, A., Lin, D., Fass, J., Yu, H.O.K., Buffalo, V., Zerbino, D.R., Diekhans, M., Nguyen, N., Ariyaratne, P.N., Sung, W.-K., Ning, Z., Haimel, M., Simpson, J.T., Fonseca, N.A., Birol, I., Docking, T.R., Ho, I.Y., Rokhsar, D.S., Chikhi, R., Lavenier, D., Chapuis, G., Naquin, D., Maillet, N., Schatz, M.C., Kelley, D.R., Phillippy, A.M., Koren, S., Yang, S.-P., Wu, W., Chou, W.-C., Srivastava, A., Shaw, T.I., Ruby, J.G., Skewes-Cox, P., Betegon, M., Dimon, M.T., Solovyev, V., Seledtsov, I., Kosarev, P., Vorobyev, D., Ramirez-Gonzalez, R., Leggett, R., MacLean, D., Xia, F., Luo, R., Li, Z., Xie, Y., Liu, B., Gnerre, S., MacCallum, I., Przybylski, D., Ribeiro, F.J., Sharpe, T., Hall, G., Kersey, P.J., Durbin, R., Jackman, S.D., Chapman, J.A., Huang, X., DeRisi, J.L., Caccamo, M., Li, Y., Jaffe, D.B., Green, R.E., Haussler, D., Korf, I., Paten, B.
Other Authors:	COMPUTER SCIENCE
Format:	Review
Published:	2013
Online Access:	http://scholarbank.nus.edu.sg/handle/10635/42336
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Institution:	National University of Singapore

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spelling	sg-nus-scholar.10635-423362023-10-29T20:03:55Z Assemblathon 1: A competitive assessment of de novo short read assembly methods Earl, D. Bradnam, K. St. John, J. Darling, A. Lin, D. Fass, J. Yu, H.O.K. Buffalo, V. Zerbino, D.R. Diekhans, M. Nguyen, N. Ariyaratne, P.N. Sung, W.-K. Ning, Z. Haimel, M. Simpson, J.T. Fonseca, N.A. Birol, I. Docking, T.R. Ho, I.Y. Rokhsar, D.S. Chikhi, R. Lavenier, D. Chapuis, G. Naquin, D. Maillet, N. Schatz, M.C. Kelley, D.R. Phillippy, A.M. Koren, S. Yang, S.-P. Wu, W. Chou, W.-C. Srivastava, A. Shaw, T.I. Ruby, J.G. Skewes-Cox, P. Betegon, M. Dimon, M.T. Solovyev, V. Seledtsov, I. Kosarev, P. Vorobyev, D. Ramirez-Gonzalez, R. Leggett, R. MacLean, D. Xia, F. Luo, R. Li, Z. Xie, Y. Liu, B. Gnerre, S. MacCallum, I. Przybylski, D. Ribeiro, F.J. Sharpe, T. Hall, G. Kersey, P.J. Durbin, R. Jackman, S.D. Chapman, J.A. Huang, X. DeRisi, J.L. Caccamo, M. Li, Y. Jaffe, D.B. Green, R.E. Haussler, D. Korf, I. Paten, B. COMPUTER SCIENCE 10.1101/gr.126599.111 Genome Research 21 12 2224-2241 GEREF 2013-07-04T08:49:14Z 2013-07-04T08:49:14Z 2011 Review Earl, D., Bradnam, K., St. John, J., Darling, A., Lin, D., Fass, J., Yu, H.O.K., Buffalo, V., Zerbino, D.R., Diekhans, M., Nguyen, N., Ariyaratne, P.N., Sung, W.-K., Ning, Z., Haimel, M., Simpson, J.T., Fonseca, N.A., Birol, I., Docking, T.R., Ho, I.Y., Rokhsar, D.S., Chikhi, R., Lavenier, D., Chapuis, G., Naquin, D., Maillet, N., Schatz, M.C., Kelley, D.R., Phillippy, A.M., Koren, S., Yang, S.-P., Wu, W., Chou, W.-C., Srivastava, A., Shaw, T.I., Ruby, J.G., Skewes-Cox, P., Betegon, M., Dimon, M.T., Solovyev, V., Seledtsov, I., Kosarev, P., Vorobyev, D., Ramirez-Gonzalez, R., Leggett, R., MacLean, D., Xia, F., Luo, R., Li, Z., Xie, Y., Liu, B., Gnerre, S., MacCallum, I., Przybylski, D., Ribeiro, F.J., Sharpe, T., Hall, G., Kersey, P.J., Durbin, R., Jackman, S.D., Chapman, J.A., Huang, X., DeRisi, J.L., Caccamo, M., Li, Y., Jaffe, D.B., Green, R.E., Haussler, D., Korf, I., Paten, B. (2011). Assemblathon 1: A competitive assessment of de novo short read assembly methods. Genome Research 21 (12) : 2224-2241. ScholarBank@NUS Repository. https://doi.org/10.1101/gr.126599.111 10889051 http://scholarbank.nus.edu.sg/handle/10635/42336 000297918600021 Scopus
institution	National University of Singapore
building	NUS Library
continent	Asia
country	Singapore Singapore
content_provider	NUS Library
collection	ScholarBank@NUS
description	10.1101/gr.126599.111
author2	COMPUTER SCIENCE
author_facet	COMPUTER SCIENCE Earl, D. Bradnam, K. St. John, J. Darling, A. Lin, D. Fass, J. Yu, H.O.K. Buffalo, V. Zerbino, D.R. Diekhans, M. Nguyen, N. Ariyaratne, P.N. Sung, W.-K. Ning, Z. Haimel, M. Simpson, J.T. Fonseca, N.A. Birol, I. Docking, T.R. Ho, I.Y. Rokhsar, D.S. Chikhi, R. Lavenier, D. Chapuis, G. Naquin, D. Maillet, N. Schatz, M.C. Kelley, D.R. Phillippy, A.M. Koren, S. Yang, S.-P. Wu, W. Chou, W.-C. Srivastava, A. Shaw, T.I. Ruby, J.G. Skewes-Cox, P. Betegon, M. Dimon, M.T. Solovyev, V. Seledtsov, I. Kosarev, P. Vorobyev, D. Ramirez-Gonzalez, R. Leggett, R. MacLean, D. Xia, F. Luo, R. Li, Z. Xie, Y. Liu, B. Gnerre, S. MacCallum, I. Przybylski, D. Ribeiro, F.J. Sharpe, T. Hall, G. Kersey, P.J. Durbin, R. Jackman, S.D. Chapman, J.A. Huang, X. DeRisi, J.L. Caccamo, M. Li, Y. Jaffe, D.B. Green, R.E. Haussler, D. Korf, I. Paten, B.
format	Review
author	Earl, D. Bradnam, K. St. John, J. Darling, A. Lin, D. Fass, J. Yu, H.O.K. Buffalo, V. Zerbino, D.R. Diekhans, M. Nguyen, N. Ariyaratne, P.N. Sung, W.-K. Ning, Z. Haimel, M. Simpson, J.T. Fonseca, N.A. Birol, I. Docking, T.R. Ho, I.Y. Rokhsar, D.S. Chikhi, R. Lavenier, D. Chapuis, G. Naquin, D. Maillet, N. Schatz, M.C. Kelley, D.R. Phillippy, A.M. Koren, S. Yang, S.-P. Wu, W. Chou, W.-C. Srivastava, A. Shaw, T.I. Ruby, J.G. Skewes-Cox, P. Betegon, M. Dimon, M.T. Solovyev, V. Seledtsov, I. Kosarev, P. Vorobyev, D. Ramirez-Gonzalez, R. Leggett, R. MacLean, D. Xia, F. Luo, R. Li, Z. Xie, Y. Liu, B. Gnerre, S. MacCallum, I. Przybylski, D. Ribeiro, F.J. Sharpe, T. Hall, G. Kersey, P.J. Durbin, R. Jackman, S.D. Chapman, J.A. Huang, X. DeRisi, J.L. Caccamo, M. Li, Y. Jaffe, D.B. Green, R.E. Haussler, D. Korf, I. Paten, B.
spellingShingle	Earl, D. Bradnam, K. St. John, J. Darling, A. Lin, D. Fass, J. Yu, H.O.K. Buffalo, V. Zerbino, D.R. Diekhans, M. Nguyen, N. Ariyaratne, P.N. Sung, W.-K. Ning, Z. Haimel, M. Simpson, J.T. Fonseca, N.A. Birol, I. Docking, T.R. Ho, I.Y. Rokhsar, D.S. Chikhi, R. Lavenier, D. Chapuis, G. Naquin, D. Maillet, N. Schatz, M.C. Kelley, D.R. Phillippy, A.M. Koren, S. Yang, S.-P. Wu, W. Chou, W.-C. Srivastava, A. Shaw, T.I. Ruby, J.G. Skewes-Cox, P. Betegon, M. Dimon, M.T. Solovyev, V. Seledtsov, I. Kosarev, P. Vorobyev, D. Ramirez-Gonzalez, R. Leggett, R. MacLean, D. Xia, F. Luo, R. Li, Z. Xie, Y. Liu, B. Gnerre, S. MacCallum, I. Przybylski, D. Ribeiro, F.J. Sharpe, T. Hall, G. Kersey, P.J. Durbin, R. Jackman, S.D. Chapman, J.A. Huang, X. DeRisi, J.L. Caccamo, M. Li, Y. Jaffe, D.B. Green, R.E. Haussler, D. Korf, I. Paten, B. Assemblathon 1: A competitive assessment of de novo short read assembly methods
author_sort	Earl, D.
title	Assemblathon 1: A competitive assessment of de novo short read assembly methods
title_short	Assemblathon 1: A competitive assessment of de novo short read assembly methods
title_full	Assemblathon 1: A competitive assessment of de novo short read assembly methods
title_fullStr	Assemblathon 1: A competitive assessment of de novo short read assembly methods
title_full_unstemmed	Assemblathon 1: A competitive assessment of de novo short read assembly methods
title_sort	assemblathon 1: a competitive assessment of de novo short read assembly methods
publishDate	2013
url	http://scholarbank.nus.edu.sg/handle/10635/42336
_version_	1781411151033139200

Assemblathon 1: A competitive assessment of de novo short read assembly methods

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