DSIM: A Distance-Based Indexing Method for Genomic Sequences

DSIM: A Distance-Based Indexing Method for Genomic Sequences

In this paper, we propose a Distance-based Sequence Indexing Method (DSIM) for indexing and searching genome databases. Borrowing the idea of video compression, we compress the genomic sequence database around a set of automatically selected reference words, formed from high-frequency data substring...

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Bibliographic Details
Main Authors: CAO, Xia, OOI, Beng-Chin, PANG, Hwee Hwa, TAN, Kian-Lee, TUNG, Anthony K. H.
Format: text
Language:English
Published: Institutional Knowledge at Singapore Management University 2005
Subjects:
Computation methods
data compression
data structures
database systems
indexing
Data sequences
Distance based Sequence Indexing Method (DSIM)
Genomic sequences
Human genome
Databases and Information Systems
Numerical Analysis and Scientific Computing
Online Access:https://ink.library.smu.edu.sg/sis_research/276
https://ink.library.smu.edu.sg/context/sis_research/article/1275/viewcontent/DSIM_edited_.pdf
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Institution: Singapore Management University
Language: English

Internet

https://ink.library.smu.edu.sg/sis_research/276
https://ink.library.smu.edu.sg/context/sis_research/article/1275/viewcontent/DSIM_edited_.pdf

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