Notes, outline and divergence times of Basidiomycota

© 2019, The Author(s). The Basidiomycota constitutes a major phylum of the kingdom Fungi and is second in species numbers to the Ascomycota. The present work provides an overview of all validly published, currently used basidiomycete genera to date in a single document. An outline of all genera of B...

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Main Authors: Mao Qiang He, Rui Lin Zhao, Kevin D. Hyde, Dominik Begerow, Martin Kemler, Andrey Yurkov, Eric H.C. McKenzie, Olivier Raspé, Makoto Kakishima, Santiago Sánchez-Ramírez, Else C. Vellinga, Roy Halling, Viktor Papp, Ivan V. Zmitrovich, Bart Buyck, Damien Ertz, Nalin N. Wijayawardene, Bao Kai Cui, Nathan Schoutteten, Xin Zhan Liu, Tai Hui Li, Yi Jian Yao, Xin Yu Zhu, An Qi Liu, Guo Jie Li, Ming Zhe Zhang, Zhi Lin Ling, Bin Cao, Vladimír Antonín, Teun Boekhout, Bianca Denise Barbosa da Silva, Eske De Crop, Cony Decock, Bálint Dima, Arun Kumar Dutta, Jack W. Fell, József Geml, Masoomeh Ghobad-Nejhad, Admir J. Giachini, Tatiana B. Gibertoni, Sergio P. Gorjón, Danny Haelewaters, Shuang Hui He, Brendan P. Hodkinson, Egon Horak, Tamotsu Hoshino, Alfredo Justo, Young Woon Lim, Nelson Menolli, Armin Mešić, Jean Marc Moncalvo, Gregory M. Mueller, László G. Nagy, R. Henrik Nilsson, Machiel Noordeloos, Jorinde Nuytinck, Takamichi Orihara, Cheewangkoon Ratchadawan, Mario Rajchenberg, Alexandre G.S. Silva-Filho, Marcelo Aloisio Sulzbacher, Zdenko Tkalčec, Ricardo Valenzuela, Annemieke Verbeken, Alfredo Vizzini, Felipe Wartchow, Tie Zheng Wei, Michael Weiß, Chang Lin Zhao, Paul M. Kirk
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Published: 2020
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spelling th-cmuir.6653943832-675172020-04-02T15:06:57Z Notes, outline and divergence times of Basidiomycota Mao Qiang He Rui Lin Zhao Kevin D. Hyde Dominik Begerow Martin Kemler Andrey Yurkov Eric H.C. McKenzie Olivier Raspé Makoto Kakishima Santiago Sánchez-Ramírez Else C. Vellinga Roy Halling Viktor Papp Ivan V. Zmitrovich Bart Buyck Damien Ertz Nalin N. Wijayawardene Bao Kai Cui Nathan Schoutteten Xin Zhan Liu Tai Hui Li Yi Jian Yao Xin Yu Zhu An Qi Liu Guo Jie Li Ming Zhe Zhang Zhi Lin Ling Bin Cao Vladimír Antonín Teun Boekhout Bianca Denise Barbosa da Silva Eske De Crop Cony Decock Bálint Dima Arun Kumar Dutta Jack W. Fell József Geml Masoomeh Ghobad-Nejhad Admir J. Giachini Tatiana B. Gibertoni Sergio P. Gorjón Danny Haelewaters Shuang Hui He Brendan P. Hodkinson Egon Horak Tamotsu Hoshino Alfredo Justo Young Woon Lim Nelson Menolli Armin Mešić Jean Marc Moncalvo Gregory M. Mueller László G. Nagy R. Henrik Nilsson Machiel Noordeloos Jorinde Nuytinck Takamichi Orihara Cheewangkoon Ratchadawan Mario Rajchenberg Alexandre G.S. Silva-Filho Marcelo Aloisio Sulzbacher Zdenko Tkalčec Ricardo Valenzuela Annemieke Verbeken Alfredo Vizzini Felipe Wartchow Tie Zheng Wei Michael Weiß Chang Lin Zhao Paul M. Kirk Agricultural and Biological Sciences Environmental Science © 2019, The Author(s). The Basidiomycota constitutes a major phylum of the kingdom Fungi and is second in species numbers to the Ascomycota. The present work provides an overview of all validly published, currently used basidiomycete genera to date in a single document. An outline of all genera of Basidiomycota is provided, which includes 1928 currently used genera names, with 1263 synonyms, which are distributed in 241 families, 68 orders, 18 classes and four subphyla. We provide brief notes for each accepted genus including information on classification, number of accepted species, type species, life mode, habitat, distribution, and sequence information. Furthermore, three phylogenetic analyses with combined LSU, SSU, 5.8s, rpb1, rpb2, and ef1 datasets for the subphyla Agaricomycotina, Pucciniomycotina and Ustilaginomycotina are conducted, respectively. Divergence time estimates are provided to the family level with 632 species from 62 orders, 168 families and 605 genera. Our study indicates that the divergence times of the subphyla in Basidiomycota are 406–430 Mya, classes are 211–383 Mya, and orders are 99–323 Mya, which are largely consistent with previous studies. In this study, all phylogenetically supported families were dated, with the families of Agaricomycotina diverging from 27–178 Mya, Pucciniomycotina from 85–222 Mya, and Ustilaginomycotina from 79–177 Mya. Divergence times as additional criterion in ranking provide additional evidence to resolve taxonomic problems in the Basidiomycota taxonomic system, and also provide a better understanding of theirphylogeny and evolution. 2020-04-02T14:54:01Z 2020-04-02T14:54:01Z 2019-11-01 Journal 18789129 15602745 2-s2.0-85075880778 10.1007/s13225-019-00435-4 https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=85075880778&origin=inward http://cmuir.cmu.ac.th/jspui/handle/6653943832/67517
institution Chiang Mai University
building Chiang Mai University Library
country Thailand
collection CMU Intellectual Repository
topic Agricultural and Biological Sciences
Environmental Science
spellingShingle Agricultural and Biological Sciences
Environmental Science
Mao Qiang He
Rui Lin Zhao
Kevin D. Hyde
Dominik Begerow
Martin Kemler
Andrey Yurkov
Eric H.C. McKenzie
Olivier Raspé
Makoto Kakishima
Santiago Sánchez-Ramírez
Else C. Vellinga
Roy Halling
Viktor Papp
Ivan V. Zmitrovich
Bart Buyck
Damien Ertz
Nalin N. Wijayawardene
Bao Kai Cui
Nathan Schoutteten
Xin Zhan Liu
Tai Hui Li
Yi Jian Yao
Xin Yu Zhu
An Qi Liu
Guo Jie Li
Ming Zhe Zhang
Zhi Lin Ling
Bin Cao
Vladimír Antonín
Teun Boekhout
Bianca Denise Barbosa da Silva
Eske De Crop
Cony Decock
Bálint Dima
Arun Kumar Dutta
Jack W. Fell
József Geml
Masoomeh Ghobad-Nejhad
Admir J. Giachini
Tatiana B. Gibertoni
Sergio P. Gorjón
Danny Haelewaters
Shuang Hui He
Brendan P. Hodkinson
Egon Horak
Tamotsu Hoshino
Alfredo Justo
Young Woon Lim
Nelson Menolli
Armin Mešić
Jean Marc Moncalvo
Gregory M. Mueller
László G. Nagy
R. Henrik Nilsson
Machiel Noordeloos
Jorinde Nuytinck
Takamichi Orihara
Cheewangkoon Ratchadawan
Mario Rajchenberg
Alexandre G.S. Silva-Filho
Marcelo Aloisio Sulzbacher
Zdenko Tkalčec
Ricardo Valenzuela
Annemieke Verbeken
Alfredo Vizzini
Felipe Wartchow
Tie Zheng Wei
Michael Weiß
Chang Lin Zhao
Paul M. Kirk
Notes, outline and divergence times of Basidiomycota
description © 2019, The Author(s). The Basidiomycota constitutes a major phylum of the kingdom Fungi and is second in species numbers to the Ascomycota. The present work provides an overview of all validly published, currently used basidiomycete genera to date in a single document. An outline of all genera of Basidiomycota is provided, which includes 1928 currently used genera names, with 1263 synonyms, which are distributed in 241 families, 68 orders, 18 classes and four subphyla. We provide brief notes for each accepted genus including information on classification, number of accepted species, type species, life mode, habitat, distribution, and sequence information. Furthermore, three phylogenetic analyses with combined LSU, SSU, 5.8s, rpb1, rpb2, and ef1 datasets for the subphyla Agaricomycotina, Pucciniomycotina and Ustilaginomycotina are conducted, respectively. Divergence time estimates are provided to the family level with 632 species from 62 orders, 168 families and 605 genera. Our study indicates that the divergence times of the subphyla in Basidiomycota are 406–430 Mya, classes are 211–383 Mya, and orders are 99–323 Mya, which are largely consistent with previous studies. In this study, all phylogenetically supported families were dated, with the families of Agaricomycotina diverging from 27–178 Mya, Pucciniomycotina from 85–222 Mya, and Ustilaginomycotina from 79–177 Mya. Divergence times as additional criterion in ranking provide additional evidence to resolve taxonomic problems in the Basidiomycota taxonomic system, and also provide a better understanding of theirphylogeny and evolution.
format Journal
author Mao Qiang He
Rui Lin Zhao
Kevin D. Hyde
Dominik Begerow
Martin Kemler
Andrey Yurkov
Eric H.C. McKenzie
Olivier Raspé
Makoto Kakishima
Santiago Sánchez-Ramírez
Else C. Vellinga
Roy Halling
Viktor Papp
Ivan V. Zmitrovich
Bart Buyck
Damien Ertz
Nalin N. Wijayawardene
Bao Kai Cui
Nathan Schoutteten
Xin Zhan Liu
Tai Hui Li
Yi Jian Yao
Xin Yu Zhu
An Qi Liu
Guo Jie Li
Ming Zhe Zhang
Zhi Lin Ling
Bin Cao
Vladimír Antonín
Teun Boekhout
Bianca Denise Barbosa da Silva
Eske De Crop
Cony Decock
Bálint Dima
Arun Kumar Dutta
Jack W. Fell
József Geml
Masoomeh Ghobad-Nejhad
Admir J. Giachini
Tatiana B. Gibertoni
Sergio P. Gorjón
Danny Haelewaters
Shuang Hui He
Brendan P. Hodkinson
Egon Horak
Tamotsu Hoshino
Alfredo Justo
Young Woon Lim
Nelson Menolli
Armin Mešić
Jean Marc Moncalvo
Gregory M. Mueller
László G. Nagy
R. Henrik Nilsson
Machiel Noordeloos
Jorinde Nuytinck
Takamichi Orihara
Cheewangkoon Ratchadawan
Mario Rajchenberg
Alexandre G.S. Silva-Filho
Marcelo Aloisio Sulzbacher
Zdenko Tkalčec
Ricardo Valenzuela
Annemieke Verbeken
Alfredo Vizzini
Felipe Wartchow
Tie Zheng Wei
Michael Weiß
Chang Lin Zhao
Paul M. Kirk
author_facet Mao Qiang He
Rui Lin Zhao
Kevin D. Hyde
Dominik Begerow
Martin Kemler
Andrey Yurkov
Eric H.C. McKenzie
Olivier Raspé
Makoto Kakishima
Santiago Sánchez-Ramírez
Else C. Vellinga
Roy Halling
Viktor Papp
Ivan V. Zmitrovich
Bart Buyck
Damien Ertz
Nalin N. Wijayawardene
Bao Kai Cui
Nathan Schoutteten
Xin Zhan Liu
Tai Hui Li
Yi Jian Yao
Xin Yu Zhu
An Qi Liu
Guo Jie Li
Ming Zhe Zhang
Zhi Lin Ling
Bin Cao
Vladimír Antonín
Teun Boekhout
Bianca Denise Barbosa da Silva
Eske De Crop
Cony Decock
Bálint Dima
Arun Kumar Dutta
Jack W. Fell
József Geml
Masoomeh Ghobad-Nejhad
Admir J. Giachini
Tatiana B. Gibertoni
Sergio P. Gorjón
Danny Haelewaters
Shuang Hui He
Brendan P. Hodkinson
Egon Horak
Tamotsu Hoshino
Alfredo Justo
Young Woon Lim
Nelson Menolli
Armin Mešić
Jean Marc Moncalvo
Gregory M. Mueller
László G. Nagy
R. Henrik Nilsson
Machiel Noordeloos
Jorinde Nuytinck
Takamichi Orihara
Cheewangkoon Ratchadawan
Mario Rajchenberg
Alexandre G.S. Silva-Filho
Marcelo Aloisio Sulzbacher
Zdenko Tkalčec
Ricardo Valenzuela
Annemieke Verbeken
Alfredo Vizzini
Felipe Wartchow
Tie Zheng Wei
Michael Weiß
Chang Lin Zhao
Paul M. Kirk
author_sort Mao Qiang He
title Notes, outline and divergence times of Basidiomycota
title_short Notes, outline and divergence times of Basidiomycota
title_full Notes, outline and divergence times of Basidiomycota
title_fullStr Notes, outline and divergence times of Basidiomycota
title_full_unstemmed Notes, outline and divergence times of Basidiomycota
title_sort notes, outline and divergence times of basidiomycota
publishDate 2020
url https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=85075880778&origin=inward
http://cmuir.cmu.ac.th/jspui/handle/6653943832/67517
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