Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax

© 2016 Nature America, Inc. All rights reserved. Plasmodium vivax is a major public health burden, responsible for the majority of malaria infections outside Africa. We explored the impact of demographic history and selective pressures on the P. vivax genome by sequencing 182 clinical isolates sampl...

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Main Authors: Daniel N. Hupalo, Zunping Luo, Alexandre Melnikov, Patrick L. Sutton, Peter Rogov, Ananias Escalante, Andrés F. Vallejo, Sócrates Herrera, Myriam Arévalo-Herrera, Qi Fan, Ying Wang, Liwang Cui, Carmen M. Lucas, Salomon Durand, Juan F. Sanchez, G. Christian Baldeviano, Andres G. Lescano, Moses Laman, Celine Barnadas, Alyssa Barry, Ivo Mueller, James W. Kazura, Alex Eapen, Deena Kanagaraj, Neena Valecha, Marcelo U. Ferreira, Wanlapa Roobsoong, Wang Nguitragool, Jetsumon Sattabonkot, Dionicia Gamboa, Margaret Kosek, Joseph M. Vinetz, Lilia González-Cerón, Bruce W. Birren, Daniel E. Neafsey, Jane M. Carlton
Other Authors: New York University
Format: Article
Published: 2018
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Online Access:https://repository.li.mahidol.ac.th/handle/123456789/42970
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spelling th-mahidol.429702019-03-14T15:04:01Z Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax Daniel N. Hupalo Zunping Luo Alexandre Melnikov Patrick L. Sutton Peter Rogov Ananias Escalante Andrés F. Vallejo Sócrates Herrera Myriam Arévalo-Herrera Qi Fan Ying Wang Liwang Cui Carmen M. Lucas Salomon Durand Juan F. Sanchez G. Christian Baldeviano Andres G. Lescano Moses Laman Celine Barnadas Alyssa Barry Ivo Mueller James W. Kazura Alex Eapen Deena Kanagaraj Neena Valecha Marcelo U. Ferreira Wanlapa Roobsoong Wang Nguitragool Jetsumon Sattabonkot Dionicia Gamboa Margaret Kosek Joseph M. Vinetz Lilia González-Cerón Bruce W. Birren Daniel E. Neafsey Jane M. Carlton New York University Broad Institute Temple University Caucaseco Scientific Research Center Universidad del Valle, Cali Dalian Institute of Biotechnology Third Military Medical University Pennsylvania State University US Naval Medical Research Unit No. 6 Papua New Guinea Institute of Medical Research Walter and Eliza Hall Institute of Medical Research University of Melbourne Instituto de Salud Global de Barcelona Case Western Reserve University National Institute of Malaria Research India Universidade de Sao Paulo - USP Mahidol University Universidad Peruana Cayetano Heredia, Instituto de Medicina Tropical Alexander von Humboldt Universidad Peruana Cayetano Heredia Johns Hopkins Bloomberg School of Public Health University of California, San Diego National Institute for Public Health Biochemistry, Genetics and Molecular Biology © 2016 Nature America, Inc. All rights reserved. Plasmodium vivax is a major public health burden, responsible for the majority of malaria infections outside Africa. We explored the impact of demographic history and selective pressures on the P. vivax genome by sequencing 182 clinical isolates sampled from 11 countries across the globe, using hybrid selection to overcome human DNA contamination. We confirmed previous reports of high genomic diversity in P. vivax relative to the more virulent Plasmodium falciparum species; regional populations of P. vivax exhibited greater diversity than the global P. falciparum population, indicating a large and/or stable population. Signals of natural selection suggest that P. vivax is evolving in response to antimalarial drugs and is adapting to regional differences in the human host and the mosquito vector. These findings underline the variable epidemiology of this parasite species and highlight the breadth of approaches that may be required to eliminate P. vivax globally. 2018-12-11T02:11:34Z 2019-03-14T08:04:01Z 2018-12-11T02:11:34Z 2019-03-14T08:04:01Z 2016-08-01 Article Nature Genetics. Vol.48, No.8 (2016), 953-958 10.1038/ng.3588 15461718 10614036 2-s2.0-84976273742 https://repository.li.mahidol.ac.th/handle/123456789/42970 Mahidol University SCOPUS https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84976273742&origin=inward
institution Mahidol University
building Mahidol University Library
continent Asia
country Thailand
Thailand
content_provider Mahidol University Library
collection Mahidol University Institutional Repository
topic Biochemistry, Genetics and Molecular Biology
spellingShingle Biochemistry, Genetics and Molecular Biology
Daniel N. Hupalo
Zunping Luo
Alexandre Melnikov
Patrick L. Sutton
Peter Rogov
Ananias Escalante
Andrés F. Vallejo
Sócrates Herrera
Myriam Arévalo-Herrera
Qi Fan
Ying Wang
Liwang Cui
Carmen M. Lucas
Salomon Durand
Juan F. Sanchez
G. Christian Baldeviano
Andres G. Lescano
Moses Laman
Celine Barnadas
Alyssa Barry
Ivo Mueller
James W. Kazura
Alex Eapen
Deena Kanagaraj
Neena Valecha
Marcelo U. Ferreira
Wanlapa Roobsoong
Wang Nguitragool
Jetsumon Sattabonkot
Dionicia Gamboa
Margaret Kosek
Joseph M. Vinetz
Lilia González-Cerón
Bruce W. Birren
Daniel E. Neafsey
Jane M. Carlton
Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax
description © 2016 Nature America, Inc. All rights reserved. Plasmodium vivax is a major public health burden, responsible for the majority of malaria infections outside Africa. We explored the impact of demographic history and selective pressures on the P. vivax genome by sequencing 182 clinical isolates sampled from 11 countries across the globe, using hybrid selection to overcome human DNA contamination. We confirmed previous reports of high genomic diversity in P. vivax relative to the more virulent Plasmodium falciparum species; regional populations of P. vivax exhibited greater diversity than the global P. falciparum population, indicating a large and/or stable population. Signals of natural selection suggest that P. vivax is evolving in response to antimalarial drugs and is adapting to regional differences in the human host and the mosquito vector. These findings underline the variable epidemiology of this parasite species and highlight the breadth of approaches that may be required to eliminate P. vivax globally.
author2 New York University
author_facet New York University
Daniel N. Hupalo
Zunping Luo
Alexandre Melnikov
Patrick L. Sutton
Peter Rogov
Ananias Escalante
Andrés F. Vallejo
Sócrates Herrera
Myriam Arévalo-Herrera
Qi Fan
Ying Wang
Liwang Cui
Carmen M. Lucas
Salomon Durand
Juan F. Sanchez
G. Christian Baldeviano
Andres G. Lescano
Moses Laman
Celine Barnadas
Alyssa Barry
Ivo Mueller
James W. Kazura
Alex Eapen
Deena Kanagaraj
Neena Valecha
Marcelo U. Ferreira
Wanlapa Roobsoong
Wang Nguitragool
Jetsumon Sattabonkot
Dionicia Gamboa
Margaret Kosek
Joseph M. Vinetz
Lilia González-Cerón
Bruce W. Birren
Daniel E. Neafsey
Jane M. Carlton
format Article
author Daniel N. Hupalo
Zunping Luo
Alexandre Melnikov
Patrick L. Sutton
Peter Rogov
Ananias Escalante
Andrés F. Vallejo
Sócrates Herrera
Myriam Arévalo-Herrera
Qi Fan
Ying Wang
Liwang Cui
Carmen M. Lucas
Salomon Durand
Juan F. Sanchez
G. Christian Baldeviano
Andres G. Lescano
Moses Laman
Celine Barnadas
Alyssa Barry
Ivo Mueller
James W. Kazura
Alex Eapen
Deena Kanagaraj
Neena Valecha
Marcelo U. Ferreira
Wanlapa Roobsoong
Wang Nguitragool
Jetsumon Sattabonkot
Dionicia Gamboa
Margaret Kosek
Joseph M. Vinetz
Lilia González-Cerón
Bruce W. Birren
Daniel E. Neafsey
Jane M. Carlton
author_sort Daniel N. Hupalo
title Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax
title_short Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax
title_full Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax
title_fullStr Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax
title_full_unstemmed Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax
title_sort population genomics studies identify signatures of global dispersal and drug resistance in plasmodium vivax
publishDate 2018
url https://repository.li.mahidol.ac.th/handle/123456789/42970
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