Pseudonocardia mangrovi sp. Nov., isolated from soil
© 2018 IUMS. A novel Gram-stain-positive, aerobic actinomycete, designated strain SMC 195T, was isolated from soil collected from a mangrove forest in Thailand. The strain produced extensively branched substrate and aerial mycelia. The substrate mycelium was fragmented into rod-shaped elements, and...
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th-mahidol.446812019-08-23T18:18:17Z Pseudonocardia mangrovi sp. Nov., isolated from soil Suchart Chanama Suphansa Janphen Chanwit Suriyachadkun Manee Chanama Chulalongkorn University Mahidol University Thailand National Science and Technology Development Agency Agricultural and Biological Sciences Immunology and Microbiology © 2018 IUMS. A novel Gram-stain-positive, aerobic actinomycete, designated strain SMC 195T, was isolated from soil collected from a mangrove forest in Thailand. The strain produced extensively branched substrate and aerial mycelia. The substrate mycelium was fragmented into rod-shaped elements, and spore chains consisting of smooth and rod-shaped spores were formed on the aerial mycelium. The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that SMC 195Trepresented a member of the genus Pseudonocardia, and the most closely phylogenetically related species were Pseudonocardia yuanmonensisJCM 18055T(99.2 % 16S rRNA gene sequence similarity), Pseudonocardia halophobicaNRRL B-16514T(98.9 %) and Pseudonocardia kujensisNRRL B-24890T(98.7 %). However, the DNA-DNA relatedness values between SMC 195Tand the closest phylogenetically related species were significantly below 70 %. The G+C content of the genomic DNA was 74±0.8 mol%. The cell wall peptidoglycan contained meso-diaminopimelic acid. The whole-cell sugars consisted of arabinose, galactose, glucose, rhamnose and ribose. The menaquinone was MK-8(H4) only. The major cellular fatty acid was the branched fatty acid iso-C16 : 0 (33.6 %). The polar lipids detected were phosphatidylethanolamine, phosphatidylmethylethanolamine, hydroxyphosphatidylethanolamine, diphosphatidylglycerol, phosphatidylinositol and unidentified glycolipids. On the basis of the results from phenotypic, chemotaxonomic and genotypic studies, it is concluded that SMC 195Trepresents a novel species of the genus Pseudonocardia, for which the name Pseudonocardia mangrovi sp. nov. is proposed. The type strain is SMC 195T(=TBRC 7778T=NBRC 113150T). 2019-08-23T10:14:34Z 2019-08-23T10:14:34Z 2018-09-01 Article International Journal of Systematic and Evolutionary Microbiology. Vol.68, No.9 (2018), 2949-2955 10.1099/ijsem.0.002927 14665026 2-s2.0-85053919197 https://repository.li.mahidol.ac.th/handle/123456789/44681 Mahidol University SCOPUS https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=85053919197&origin=inward |
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Agricultural and Biological Sciences Immunology and Microbiology Suchart Chanama Suphansa Janphen Chanwit Suriyachadkun Manee Chanama Pseudonocardia mangrovi sp. Nov., isolated from soil |
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© 2018 IUMS. A novel Gram-stain-positive, aerobic actinomycete, designated strain SMC 195T, was isolated from soil collected from a mangrove forest in Thailand. The strain produced extensively branched substrate and aerial mycelia. The substrate mycelium was fragmented into rod-shaped elements, and spore chains consisting of smooth and rod-shaped spores were formed on the aerial mycelium. The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that SMC 195Trepresented a member of the genus Pseudonocardia, and the most closely phylogenetically related species were Pseudonocardia yuanmonensisJCM 18055T(99.2 % 16S rRNA gene sequence similarity), Pseudonocardia halophobicaNRRL B-16514T(98.9 %) and Pseudonocardia kujensisNRRL B-24890T(98.7 %). However, the DNA-DNA relatedness values between SMC 195Tand the closest phylogenetically related species were significantly below 70 %. The G+C content of the genomic DNA was 74±0.8 mol%. The cell wall peptidoglycan contained meso-diaminopimelic acid. The whole-cell sugars consisted of arabinose, galactose, glucose, rhamnose and ribose. The menaquinone was MK-8(H4) only. The major cellular fatty acid was the branched fatty acid iso-C16 : 0 (33.6 %). The polar lipids detected were phosphatidylethanolamine, phosphatidylmethylethanolamine, hydroxyphosphatidylethanolamine, diphosphatidylglycerol, phosphatidylinositol and unidentified glycolipids. On the basis of the results from phenotypic, chemotaxonomic and genotypic studies, it is concluded that SMC 195Trepresents a novel species of the genus Pseudonocardia, for which the name Pseudonocardia mangrovi sp. nov. is proposed. The type strain is SMC 195T(=TBRC 7778T=NBRC 113150T). |
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Chulalongkorn University |
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Chulalongkorn University Suchart Chanama Suphansa Janphen Chanwit Suriyachadkun Manee Chanama |
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Article |
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Suchart Chanama Suphansa Janphen Chanwit Suriyachadkun Manee Chanama |
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Suchart Chanama |
title |
Pseudonocardia mangrovi sp. Nov., isolated from soil |
title_short |
Pseudonocardia mangrovi sp. Nov., isolated from soil |
title_full |
Pseudonocardia mangrovi sp. Nov., isolated from soil |
title_fullStr |
Pseudonocardia mangrovi sp. Nov., isolated from soil |
title_full_unstemmed |
Pseudonocardia mangrovi sp. Nov., isolated from soil |
title_sort |
pseudonocardia mangrovi sp. nov., isolated from soil |
publishDate |
2019 |
url |
https://repository.li.mahidol.ac.th/handle/123456789/44681 |
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1763495202872360960 |