Two-phase importance sampling for inference about transmission trees

by Elina Numminen, Claire Chewapreecha, Jukka Sirén, Claudia Turner, Paul Turner, Stephen D. Bentley, Jukka Corander
Published 2018

Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the env...

by Theodore Gouliouris, Kathy E. Raven, Danesh Moradigaravand, Catherine Ludden, Francesc Coll, Beth Blane, Plamena Naydenova, Carolyne Horner, Nicholas M. Brown, Jukka Corander, Direk Limmathurotsakul, Julian Parkhill, Sharon J. Peacock
Published 2020

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

by Marcin J. Skwark, Nicholas J. Croucher, Santeri Puranen, Claire Chewapreecha, Maiju Pesonen, Ying Ying Xu, Paul Turner, Simon R. Harris, Stephen B. Beres, James M. Musser, Julian Parkhill, Stephen D. Bentley, Erik Aurell, Jukka Corander
Published 2018

Dense genomic sampling identifies highways of pneumococcal recombination

by Claire Chewapreecha, Simon R. Harris, Nicholas J. Croucher, Claudia Turner, Pekka Marttinen, Lu Cheng, Alberto Pessia, David M. Aanensen, Alison E. Mather, Andrew J. Page, Susannah J. Salter, David Harris, Francois Nosten, David Goldblatt, Jukka Corander, Julian Parkhill, Paul Turner, Stephen D. Bentley
Published 2018

Co-evolutionary Signals Identify Burkholderia pseudomallei Survival Strategies in a Hostile Environment

by Claire Chewapreecha, Johan Pensar, Supaksorn Chattagul, Maiju Pesonen, Apiwat Sangphukieo, Phumrapee Boonklang, Chotima Potisap, Sirikamon Koosakulnirand, Edward J. Feil, Susanna Dunachie, Narisara Chantratita, Direk Limmathurotsakul, Sharon J. Peacock, Nick P.J. Day, Julian Parkhill, Nicholas R. Thomson, Rasana W. Sermswan, Jukka Corander
Published 2022

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

by Guillaume Méric, Leonardos Mageiros, Johan Pensar, Maisem Laabei, Koji Yahara, Ben Pascoe, Nattinee Kittiwan, Phacharaporn Tadee, Virginia Post, Sarah Lamble, Rory Bowden, James E. Bray, Mario Morgenstern, Keith A. Jolley, Martin C.J. Maiden, Edward J. Feil, Xavier Didelot, Maria Miragaia, Herminia de Lencastre, T. Fintan Moriarty, Holger Rohde, Ruth Massey, Dietrich Mack, Jukka Corander, Samuel K. Sheppard
Published 2018

Global and regional dissemination and evolution of Burkholderia pseudomallei

by Claire Chewapreecha, Matthew T.G. Holden, Minna Vehkala, Niko Välimäki, Zhirong Yang, Simon R. Harris, Alison E. Mather, Apichai Tuanyok, Birgit De Smet, Simon Le Hello, Chantal Bizet, Mark Mayo, Vanaporn Wuthiekanun, Direk Limmathurotsakul, Rattanaphone Phetsouvanh, Brian G. Spratt, Jukka Corander, Paul Keim, Gordon Dougan, David A.B. Dance, Bart J. Currie, Julian Parkhill, Sharon J. Peacock
Published 2018