Two-phase importance sampling for inference about transmission trees

by Elina Numminen, Claire Chewapreecha, Jukka Sirén, Claudia Turner, Paul Turner, Stephen D. Bentley, Jukka Corander
Published 2018

Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei

by Claire Chewapreecha, Alison E. Mather, Simon R. Harris, Martin Hunt, Matthew T.G. Holden, Chutima Chaichana, Vanaporn Wuthiekanun, Gordon Dougan, Nicholas P.J. Day, Direk Limmathurotsakul, Julian Parkhill, Sharon J. Peacock
Published 2020

Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes

by Claire Chewapreecha, Pekka Marttinen, Nicholas J. Croucher, Susannah J. Salter, Simon R. Harris, Alison E. Mather, William P. Hanage, David Goldblatt, Francois H. Nosten, Claudia Turner, Paul Turner, Stephen D. Bentley, Julian Parkhill
Published 2018

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

by Marcin J. Skwark, Nicholas J. Croucher, Santeri Puranen, Claire Chewapreecha, Maiju Pesonen, Ying Ying Xu, Paul Turner, Simon R. Harris, Stephen B. Beres, James M. Musser, Julian Parkhill, Stephen D. Bentley, Erik Aurell, Jukka Corander
Published 2018

Dense genomic sampling identifies highways of pneumococcal recombination

by Claire Chewapreecha, Simon R. Harris, Nicholas J. Croucher, Claudia Turner, Pekka Marttinen, Lu Cheng, Alberto Pessia, David M. Aanensen, Alison E. Mather, Andrew J. Page, Susannah J. Salter, David Harris, Francois Nosten, David Goldblatt, Jukka Corander, Julian Parkhill, Paul Turner, Stephen D. Bentley
Published 2018

Co-evolutionary Signals Identify Burkholderia pseudomallei Survival Strategies in a Hostile Environment

by Claire Chewapreecha, Johan Pensar, Supaksorn Chattagul, Maiju Pesonen, Apiwat Sangphukieo, Phumrapee Boonklang, Chotima Potisap, Sirikamon Koosakulnirand, Edward J. Feil, Susanna Dunachie, Narisara Chantratita, Direk Limmathurotsakul, Sharon J. Peacock, Nick P.J. Day, Julian Parkhill, Nicholas R. Thomson, Rasana W. Sermswan, Jukka Corander
Published 2022

Evidence for soft selective sweeps in the evolution of pneumococcal multidrug resistance and vaccine escape

by Nicholas J. Croucher, Claire Chewapreecha, William P. Hanage, Simon R. Harris, Lesley McGee, Mark Van Der Linden, Jae Hoon Song, Kwan Soo Ko, Herminia De Lencastre, Claudia Turner, Fan Yang, Raquel Sa-Leao, Bernard Beall, Keith P. Klugman, Julian Parkhill, Paul Turner, Stephen D. Bentley
Published 2018

Antibiotic susceptibility of clinical burkholderia pseudomallei isolates in northeast thailand from 2015 to 2018 and the genomic characterization of β-lactam-resistant isolates

by Shirley Yi Fen Hii, Sarunporn Tandhavanant, Rungnapa Phunpang, Peeraya Ekchariyawat, Natnaree Saiprom, Claire Chewapreecha, Rathanin Seng, Ekkachai Thiansukhon, Chumpol Morakot, Narongchai Sangsa, Sunee Chayangsu, Somchai Chuananont, Kittisak Tanwisaid, Wirayut Silakun, Noppol Buasi, Seksan Chaisuksant, Tanin Hompleum, Ploenchan Chetchotisakd, Nicholas P.J. Day, Wasun Chantratita, Ganjana Lertmemongkolchai, T. Eoin West, Narisara Chantratita
Published 2022

Global and regional dissemination and evolution of Burkholderia pseudomallei

by Claire Chewapreecha, Matthew T.G. Holden, Minna Vehkala, Niko Välimäki, Zhirong Yang, Simon R. Harris, Alison E. Mather, Apichai Tuanyok, Birgit De Smet, Simon Le Hello, Chantal Bizet, Mark Mayo, Vanaporn Wuthiekanun, Direk Limmathurotsakul, Rattanaphone Phetsouvanh, Brian G. Spratt, Jukka Corander, Paul Keim, Gordon Dougan, David A.B. Dance, Bart J. Currie, Julian Parkhill, Sharon J. Peacock
Published 2018

Global phylogenomic analysis of nonencapsulated Streptococcus pneumoniae reveals a deep-branching classic lineage that is distinct from multiple sporadic lineages

by Markus Hilty, Daniel Wüthrich, Susannah J. Salter, Hansjürg Engel, Samuel Campbell, Raquel Sá-Leão, Hermínia De Lencastre, Peter Hermans, Ewa Sadowy, Paul Turner, Claire Chewapreecha, Mathew Diggle, Gerd Pluschke, Lesley McGee, Özgen Köseoʇlu Eser, Donald E. Low, Heidi Smith-Vaughan, Andrea Endimiani, Marianne Kü Ffer, Mélanie Dupasquier, Emmanuel Beaudoing, Johann Weber, Rémy Bruggmann, William P. Hanage, Julian Parkhill, Lucy J. Hathaway, Kathrin Mü Hlemann, Stephen D. Bentley
Published 2018