Early signals of vaccine-driven perturbation seen in pneumococcal carriage population genomic data

by Chrispin Chaguza, Ellen Heinsbroek, Rebecca A. Gladstone, Terence Tafatatha, Maaike Alaerts, Chikondi Peno, Jennifer E. Cornick, Patrick Musicha, Naor Bar-Zeev, Arox Kamng'Ona, Aras Kadioglu, Lesley McGee, William P. Hanage, Robert F. Breiman, Robert S. Heyderman, Neil French, Dean B. Everett, Stephen D. Bentley
Published 2020

Evidence for soft selective sweeps in the evolution of pneumococcal multidrug resistance and vaccine escape

by Nicholas J. Croucher, Claire Chewapreecha, William P. Hanage, Simon R. Harris, Lesley McGee, Mark Van Der Linden, Jae Hoon Song, Kwan Soo Ko, Herminia De Lencastre, Claudia Turner, Fan Yang, Raquel Sa-Leao, Bernard Beall, Keith P. Klugman, Julian Parkhill, Paul Turner, Stephen D. Bentley
Published 2018

Global phylogenomic analysis of nonencapsulated Streptococcus pneumoniae reveals a deep-branching classic lineage that is distinct from multiple sporadic lineages

by Markus Hilty, Daniel Wüthrich, Susannah J. Salter, Hansjürg Engel, Samuel Campbell, Raquel Sá-Leão, Hermínia De Lencastre, Peter Hermans, Ewa Sadowy, Paul Turner, Claire Chewapreecha, Mathew Diggle, Gerd Pluschke, Lesley McGee, Özgen Köseoʇlu Eser, Donald E. Low, Heidi Smith-Vaughan, Andrea Endimiani, Marianne Kü Ffer, Mélanie Dupasquier, Emmanuel Beaudoing, Johann Weber, Rémy Bruggmann, William P. Hanage, Julian Parkhill, Lucy J. Hathaway, Kathrin Mü Hlemann, Stephen D. Bentley
Published 2018