SAINT-MS1: Protein-protein interaction scoring using label-free intensity data in affinity purification-mass spectrometry experiments

بواسطة Choi, H., Glatter, T., Gstaiger, M., Nesvizhskii, A.I.
منشور في 2014

Sparsely correlated hidden Markov models with application to genome-wide location studies

بواسطة Choi, H., Fermin, D., Nesvizhskii, A.I., Ghosh, D., Qin, Z.S.
منشور في 2014

MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines

بواسطة Kwon, T., Choi, H., Vogel, C., Nesvizhskii, A.I., Marcotte, E.M.
منشور في 2014

Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology

بواسطة Ning, K., Ng, H.K., Srihari, S., Leong, H.W., Nesvizhskii, A.I.
منشور في 2013

LuciPHOr: Algorithm for phosphorylation site localization with false localization rate estimation using modified target-decoy approach

بواسطة Fermin, D., Walmsley, S.J., Gingras, A.-C., Choi, H., Nesvizhskii, A.I.
منشور في 2014

Analyzing protein-protein interactions from affinity purification-mass spectrometry data with SAINT

بواسطة Choi, H., Liu, G., Mellacheruvu, D., Tyers, M., Gingras, A.-C., Nesvizhskii, A.I.
منشور في 2014

A chloroform-assisted protein isolation method followed by capillary NanoLC-MS identify estrogen-regulated proteins from MCF7 cells

بواسطة Vellaichamy, A, Lin, C.-Y, Aye, T.T, Kunde, G.R, Nesvizhskii, A.I, Liu, E.T, Sze, S.K
منشور في 2020

Using ProHits to store, annotate, and analyze Affinity purification-mass spectrometry (AP-MS) Data

بواسطة Liu, G., Zhang, J., Choi, H., Lambert, J.-P., Srikumar, T., Larsen, B., Nesvizhskii, A.I., Raught, B., Tyers, M., Gingras, A.-C.
منشور في 2014

SUMOylation pathway in Trypanosoma cruzi: Functional characterization and proteomic analysis of target proteins

بواسطة Bayona, J.C., Nakayasu, E.S., Laverrière, M., Aguilar, C., Sobreira, T.J.P., Choi, H., Nesvizhskii, A.I., Almeida, I.C., Cazzulo, J.J., Alvarez, V.E.
منشور في 2014

Metabolites of purine nucleoside Phosphorylase (NP) in serum have the potential to delineate Pancreatic Adenocarcinoma

بواسطة Vareed S.K., Bhat V.B., Thompson C., Vasu V.T., Fermin D., Choi H., Creighton C.J., Gayatri S., Lan L., Putluri N., Thangjam G.S., Kaur P., Shabahang M., Giri J.G., Nesvizhskii A.I., Asea A.A.A., Cashikar A.G., Rao A., McLoughlin J., Sreekumar A.
منشور في 2018

The CRAPome: A contaminant repository for affinity purification-mass spectrometry data

بواسطة Mellacheruvu, D., Wright, Z., Couzens, A.L., Lambert, J.-P., St-Denis, N.A., Li, T., Miteva, Y.V., Hauri, S., Sardiu, M.E., Low, T.Y., Halim, V.A., Bagshaw, R.D., Hubner, N.C., Al-Hakim, A., Bouchard, A., Faubert, D., Fermin, D., Dunham, W.H., Goudreault, M., Lin, Z.-Y., Badillo, B.G., Pawson, T., Durocher, D., Coulombe, B., Aebersold, R., Superti-Furga, G., Colinge, J., Heck, A.J.R., Choi, H., Gstaiger, M., Mohammed, S., Cristea, I.M., Bennett, K.L., Washburn, M.P., Raught, B., Ewing, R.M., Gingras, A.-C., Nesvizhskii, A.I.
منشور في 2014