Virus classification – where do you draw the line?

by Peter Simmonds, Pakorn Aiewsakun
Published 2019

The first co-opted endogenous foamy viruses and the evolutionary history of reptilian foamy viruses

by Pakorn Aiewsakun, Peter Simmonds, Aris Katzourakis
Published 2020

Reply to ‘Evolutionary stasis of viruses?’

by Peter Simmonds, Pakorn Aiewsakun, Aris Katzourakis
Published 2020

Prisoners of war — host adaptation and its constraints on virus evolution

by Peter Simmonds, Pakorn Aiewsakun, Aris Katzourakis
Published 2020

Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: Steps towards a unified taxonomy

by Pakorn Aiewsakun, Evelien M. Adriaenssens, Rob Lavigne, Andrew M. Kropinski, Peter Simmonds
Published 2019

Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes

by Ying Liu, Tatiana A. Demina, Simon Roux, Pakorn Aiewsakun, Darius Kazlauskas, Peter Simmonds, David Prangishvili, Hanna M. Oksanen, Mart Krupovic
Published 2022

Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages

by Jakub Barylski, François Enault, Bas E. Dutilh, Margo Bp Schuller, Robert A. Edwards, Annika Gillis, Jochen Klumpp, Petar Knezevic, Mart Krupovic, Jens H. Kuhn, Rob Lavigne, Hanna M. Oksanen, Matthew B. Sullivan, Ho Bin Jang, Peter Simmonds, Pakorn Aiewsakun, Johannes Wittmann, Igor Tolstoy, J. Rodney Brister, Andrew M. Kropinski, Evelien M. Adriaenssens
Published 2020

Convalescent plasma therapy for the treatment of patients with COVID-19: Assessment of methods available for antibody detection and their correlation with neutralising antibody lev...

by Heli Harvala, Matthew L. Robb, Nick Watkins, Samreen Ijaz, Steven Dicks, Monika Patel, Piyada Supasa, Dejnirattisai Wanwisa, Chang Liu, Juthathip Mongkolsapaya, Abbie Bown, Daniel Bailey, Richard Vipond, Nicholas Grayson, Nigel Temperton, Sunetra Gupta, Rutger J. Ploeg, Jai Bolton, Alex Fyfe, Robin Gopal, Peter Simmonds, Gavin Screaton, Craig Thompson, Tim Brooks, Maria Zambon, Gail Miflin, David J. Roberts
Published 2022

Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses

by Anna L. McNaughton, Robert S. Paton, Matthew Edmans, Jonathan Youngs, Judith Wellens, Prabhjeet Phalora, Alex Fyfe, Sandra Belij-Rammerstorfer, Jai S. Bolton, Jonathan Ball, George W. Carnell, Wanwisa Dejnirattisai, Christina Dold, David W. Eyre, Philip Hopkins, Alison Howarth, Kreepa Kooblall, Hannah Klim, Susannah Leaver, Lian Ni Lee, César López-Camacho, Sheila F. Lumley, Derek C. Macallan, Alexander J. Mentzer, Nicholas M. Provine, Jeremy Ratcliff, Jose Slon-Compos, Donal Skelly, Lucas Stolle, Piyada Supasa, Nigel Temperton, Chris Walker, Beibei Wang, Duncan Wyncoll, Peter Simmonds, Teresa Lambe, John Kenneth Baillie, Malcolm G. Semple, Peter J.M. Openshaw, Uri Obolski, Marc Turner, Miles Carroll, Juthathip Mongkolsapaya, Gavin Screaton, Stephen H. Kennedy, Lisa Jarvis, Eleanor Barnes, Susanna Dunachie, José Lourenço, Philippa C. Matthews, Tihana Bicanic, Paul Klenerman, Sunetra Gupta, Craig P. Thompson
Published 2022

MAIT cells are activated during human viral infections

by Bonnie Van Wilgenburg, Iris Scherwitzl, Edward C. Hutchinson, Tianqi Leng, Ayako Kurioka, Corinna Kulicke, Catherine De Lara, Suzanne Cole, Sirijitt Vasanawathana, Wannee Limpitikul, Prida Malasit, Duncan Young, Laura Denney, Michael D. Moore, Paolo Fabris, Maria Teresa Giordani, Ye Htun Oo, Stephen M. Laidlaw, Lynn B. Dustin, Ling Pei Ho, Fiona M. Thompson, Narayan Ramamurthy, Juthathip Mongkolsapaya, Christian B. Willberg, Gavin R. Screaton, Paul Klenerman, Eleanor Barnes, Jonathan Ball, Gary Burgess, Graham Cooke, John Dillon, Charles Gore, Graham Foster, Neil Guha, Rachel Halford, Cham Herath, Chris Holmes, Anita Howe, Emma Hudson, William Irving, Salim Khakoo, Diana Koletzki, Natasha Martin, Tamyo Mbisa, Jane McKeating, John McLauchlan, Alec Miners, Andrea Murray, Peter Shaw, Peter Simmonds, Chris Spencer, Paul Targett-Adams, Emma Thomson, Peter Vickerman, Nicole Zitzmann
Published 2018

Broad and strong memory CD4⁺ and CD8⁺ T cells induced by SARS-CoV-2 in UK convalescent individuals following COVID-19

by Yanchun Peng, Alexander J. Mentzer, Guihai Liu, Xuan Yao, Zixi Yin, Danning Dong, Wanwisa Dejnirattisai, Timothy Rostron, Piyada Supasa, Chang Liu, César López-Camacho, Jose Slon-Campos, Yuguang Zhao, David I. Stuart, Guido C. Paesen, Jonathan M. Grimes, Alfred A. Antson, Oliver W. Bayfield, Dorothy E.D.P. Hawkins, De Sheng Ker, Beibei Wang, Lance Turtle, Krishanthi Subramaniam, Paul Thomson, Ping Zhang, Christina Dold, Jeremy Ratcliff, Peter Simmonds, Thushan de Silva, Paul Sopp, Dannielle Wellington, Ushani Rajapaksa, Yi Ling Chen, Mariolina Salio, Giorgio Napolitani, Wayne Paes, Persephone Borrow, Benedikt M. Kessler, Jeremy W. Fry, Nikolai F. Schwabe, Malcolm G. Semple, J. Kenneth Baillie, Shona C. Moore, Peter J.M. Openshaw, M. Azim Ansari, Susanna Dunachie, Eleanor Barnes, John Frater, Georgina Kerr, Philip Goulder, Teresa Lockett, Robert Levin, Yonghong Zhang, Ronghua Jing, Ling Pei Ho, Eleanor Barnes, Danning Dong, Tao Dong, Susanna Dunachie, John Frater, Philip Goulder, Georgina Kerr, Paul Klenerman, Guihai Liu, Andrew McMichael, Graham Ogg, Yanchun Peng, Mariolina Salio, Xuan Yao, Zixi Yin, J. Kenneth Baillie, Paul Klenerman, Alexander J. Mentzer, Shona C. Moore, Peter J.M. Openshaw, Malcolm G. Semple, David I. Stuart, Richard J. Cornall, Christopher P. Conlon, Paul Klenerman, Gavin R. Screaton, Juthathip Mongkolsapaya, Andrew McMichael, Julian C. Knight, Graham Ogg, Tao Dong
Published 2020