Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses

by Fullwood, M.J., Wei, C.-L., Liu, E.T., Ruan, Y.
Published 2014

An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data

by Xu, H., Wei, C.-L., Lin, F., Sung, W.-K.
Published 2013

Differential expression and localization of nitric oxide synthases in cirrhotic livers of bile duct-ligated rats

by Wei, C.-L., Khoo, H.-E., Lee, K.-H., Hon, W.-M.
Published 2014

Atopy, serum IgE, and interleukin-14 in steroid-responsive nephrotic syndrome

by Cheung, W., Wei, C.-L., Seah, C.-C., Yap, H.-K., Jordan, S.C.
Published 2013

BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation

by Lim, J.-Q., Tennakoon, C., Li, G., Wong, E., Ruan, Y., Wei, C.-L., Sung, W.-K.
Published 2014

A signal-noise model for significance analysis of ChIP-seq with negative control

by Xu, H., Handoko, L., Wei, X., Ye, C., Sheng, J., Wei, C.-L., Lin, F., Sung, W.-K.
Published 2013

Target gene analysis by microarrays and chromatin immunoprecipitation identifies HEY proteins as highly redundant bHLH repressors

by Heisig J., Weber D., Englberger E., Winkler A., Kneitz S., Sung W.-K., Wolf E., Eilers M., Wei C.-L., Gessler M.
Published 2018

Interleukin-13 genetic polymorphisms in Singapore Chinese children correlate with long-term outcome of minimal-change disease

by Wei, C.-L., Cheung, W., Heng, C.-K., Arty, N., Chong, S.S., Lee, B.-W., Puah, K.-L., Yap, H.-K.
Published 2013

PET-tool: A software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data

by Chiu, K.P., Wong, C.-H., Chen, Q., Ariyaratne, P., Ooi, H.S., Wei, C.-L., Sung, W.-K.K., Ruan, Y.
Published 2013

Pathway aberrations of murine melanoma cells observed in Paired-End diTag transcriptomes

by Chiu, K.P., Ariyaratne, P., Xu, H., Tan, A., Ng, P., Liu, E.T.-B., Ruan, Y., Wei, C.-L., Sung, W.-K.K.
Published 2013

De-Novo Identification of PPARγ/RXR Binding Sites and Direct Targets during Adipogenesis

by Hamza M.S., Pott S., Vega V.B., Thomsen J.S., Kandhadayar G.S., Ng P.W.P., Chiu K.P., Pettersson S., Wei C.L., Ruan Y., Liu E.T.
Published 2018

RNA viral community in human feces: Prevalence of plant pathogenic viruses

by Zhang T., Breitbart M., Lee W.H., Run J.-Q., Wei C.L., Soh S.W.L., Hibberd M.L., Liu E.T., Rohwer F., Ruan Y.
Published 2019

Overexpression of interleukin-13 induces minimal-change-like nephropathy in rats

by Lai, K.-W., Wei, C.-L., Tan, L.-K., Yap, H.-K., Lee, C.G.L., Tan, P.-H., Chiang, G.S.C., Jordan, S.C.
Published 2011

Dynamic changes in the human methylome during differentiation

by Laurent, L., Wong, E., Li, G., Huynh, T., Tsirigos, A., Ong, C.T., Low, H.M., Sung, K.W.K., Rigoutsos, I., Loring, J., Wei, C.-L.
Published 2013

Sall4 Regulates Distinct Transcription Circuitries in Different Blastocyst-Derived Stem Cell Lineages

by Lim, C.Y., Tam, W.-L., Zhang, J., Ang, H.S., Jia, H., Lipovich, L., Ng, H.-H., Wei, C.-L., Sung, W.K., Robson, P., Yang, H., Lim, B.
Published 2014

Jmjd3 contributes to the control of gene expression in LPS-activated macrophages

by De Santa, F., Narang, V., Yap, Z.H., Tusi, B.K., Burgold, T., Austenaa, L., Bucci, G., Caganova, M., Notarbartolo, S., Casola, S., Testa, G., Sung, W.-K., Wei, C.-L., Natoli, G.
Published 2013

ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

by Li, G., Xu, H., Mulawadi, F.H., Velkov, S., Vega, V., Ariyaratne, P.N., Mohamed, Y.B., Ooi, H.-S., Sung, W.-K., Fullwood, M.J., Wei, C.-L., Ruan, Y., Tennakoon, C.
Published 2011

The airbone metagenome in an indoor urban environment

by Tringe, S.G., Zhang, T., Liu, X., Yu, Y., Lee, W.H., Yap, J., Yao, F., Suan, S.T.., Ing, S.K., Haynes, M., Rohwer, F., Wei, C.L., Tan, P., Bristow, J., Rubin, E.M., Ruan, Y.
Published 2014

Whole-Genome Mapping of Histone H3 Lys4 and 27 Trimethylations Reveals Distinct Genomic Compartments in Human Embryonic Stem Cells

by Zhao, X.D., Han, X., Chew, J.L., Liu, J., Chiu, K.P., Choo, A., Orlov, Y.L., Sung, W.-K., Shahab, A., Kuznetsov, V.A., Bourque, G., Oh, S., Ruan, Y., Ng, H.-H., Wei, C.-L.
Published 2013

Mutational dynamics of the SARS coronavirus in cell culture and human populations isolated in 2003

by Vega V.B., Ruan Y., Liu J., Lee W.H., Wei C.L., Se-Thoe S.Y., Tang K.F., Zhang T., Kolatkar P.R., Ooi E.E., Ling A.E., Stanton, Lawrence Walter, Long P.M., Liu E.T.
Published 2018