Nitzschia omanensis sp. nov., a new diatom species from the marine coast of Oman, characterized by valve morphology and molecular data

An unidentified diatom species belonging in the genus Nitzschia isolated from samples in the Omani coastal region of the Arabian Sea is the focus of the present study. This species has been successfully cultivated in the laboratory and DNA was harvested and sequenced. Light microscopy (LM) and scann...

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Main Authors: Barkia, Ines, Li, Chun Lian, Saari, Nazamid, Witkowski, Andrzej
Format: Article
Language:English
Published: Czech Phycological Society 2019
Online Access:http://psasir.upm.edu.my/id/eprint/81479/1/SEA.pdf
http://psasir.upm.edu.my/id/eprint/81479/
https://fottea.czechphycology.cz/artkey/fot-201902-0007_nitzschia_omanensis_sp_nov_a_new_diatom_species_from_the_marine_coast_of_oman_characterized_by_valve_morpho.php
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Institution: Universiti Putra Malaysia
Language: English
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spelling my.upm.eprints.814792021-06-13T01:33:58Z http://psasir.upm.edu.my/id/eprint/81479/ Nitzschia omanensis sp. nov., a new diatom species from the marine coast of Oman, characterized by valve morphology and molecular data Barkia, Ines Li, Chun Lian Saari, Nazamid Witkowski, Andrzej An unidentified diatom species belonging in the genus Nitzschia isolated from samples in the Omani coastal region of the Arabian Sea is the focus of the present study. This species has been successfully cultivated in the laboratory and DNA was harvested and sequenced. Light microscopy (LM) and scanning electron microscopy (SEM) examination of the strain revealed some distinct features, of which the ultrastructure of canal raphe and the absence of central nodule are the most remarkable ones. In terms of morphology, the strain being studied resembles taxa belonging in Nitzschia sect. Lanceolatae. However, our phylogenetic tree based on a three-gene dataset, comprising concatenated nuclear-encoded small-subunit ribosomal DNAs (SSU) and chloroplast encoded (rbcL and psbC) shows that our strain is sister to N. filiformis, which belongs in Nitzschia sect. Obtusae. This species that we have named Nitzschia omanensis, is thus far only known from the harsh coastal waters of Oman, which are characterized by very high daily temperatures and extremely low precipitation. Czech Phycological Society 2019 Article PeerReviewed text en http://psasir.upm.edu.my/id/eprint/81479/1/SEA.pdf Barkia, Ines and Li, Chun Lian and Saari, Nazamid and Witkowski, Andrzej (2019) Nitzschia omanensis sp. nov., a new diatom species from the marine coast of Oman, characterized by valve morphology and molecular data. Fottea, 19 (2). pp. 175-184. ISSN 1802-5439; ESSN: 1805-4927 https://fottea.czechphycology.cz/artkey/fot-201902-0007_nitzschia_omanensis_sp_nov_a_new_diatom_species_from_the_marine_coast_of_oman_characterized_by_valve_morpho.php 10.5507/fot.2019.008
institution Universiti Putra Malaysia
building UPM Library
collection Institutional Repository
continent Asia
country Malaysia
content_provider Universiti Putra Malaysia
content_source UPM Institutional Repository
url_provider http://psasir.upm.edu.my/
language English
description An unidentified diatom species belonging in the genus Nitzschia isolated from samples in the Omani coastal region of the Arabian Sea is the focus of the present study. This species has been successfully cultivated in the laboratory and DNA was harvested and sequenced. Light microscopy (LM) and scanning electron microscopy (SEM) examination of the strain revealed some distinct features, of which the ultrastructure of canal raphe and the absence of central nodule are the most remarkable ones. In terms of morphology, the strain being studied resembles taxa belonging in Nitzschia sect. Lanceolatae. However, our phylogenetic tree based on a three-gene dataset, comprising concatenated nuclear-encoded small-subunit ribosomal DNAs (SSU) and chloroplast encoded (rbcL and psbC) shows that our strain is sister to N. filiformis, which belongs in Nitzschia sect. Obtusae. This species that we have named Nitzschia omanensis, is thus far only known from the harsh coastal waters of Oman, which are characterized by very high daily temperatures and extremely low precipitation.
format Article
author Barkia, Ines
Li, Chun Lian
Saari, Nazamid
Witkowski, Andrzej
spellingShingle Barkia, Ines
Li, Chun Lian
Saari, Nazamid
Witkowski, Andrzej
Nitzschia omanensis sp. nov., a new diatom species from the marine coast of Oman, characterized by valve morphology and molecular data
author_facet Barkia, Ines
Li, Chun Lian
Saari, Nazamid
Witkowski, Andrzej
author_sort Barkia, Ines
title Nitzschia omanensis sp. nov., a new diatom species from the marine coast of Oman, characterized by valve morphology and molecular data
title_short Nitzschia omanensis sp. nov., a new diatom species from the marine coast of Oman, characterized by valve morphology and molecular data
title_full Nitzschia omanensis sp. nov., a new diatom species from the marine coast of Oman, characterized by valve morphology and molecular data
title_fullStr Nitzschia omanensis sp. nov., a new diatom species from the marine coast of Oman, characterized by valve morphology and molecular data
title_full_unstemmed Nitzschia omanensis sp. nov., a new diatom species from the marine coast of Oman, characterized by valve morphology and molecular data
title_sort nitzschia omanensis sp. nov., a new diatom species from the marine coast of oman, characterized by valve morphology and molecular data
publisher Czech Phycological Society
publishDate 2019
url http://psasir.upm.edu.my/id/eprint/81479/1/SEA.pdf
http://psasir.upm.edu.my/id/eprint/81479/
https://fottea.czechphycology.cz/artkey/fot-201902-0007_nitzschia_omanensis_sp_nov_a_new_diatom_species_from_the_marine_coast_of_oman_characterized_by_valve_morpho.php
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