Discrimination of civet and non-civet coffee by linear discriminant analysis (LDA), partial least squares (PLS-DA), and orthogonal projection to latent structures (OPLS-DA)
One of the issues faced by coffee traders and consumers is the widespread availability of adulterated civet coffee (kopi luwak) in the market. To address this problem, the industry needs a way to discriminate between civet and non-civet coffee. Metabolomics data consisting of 24 coffee beans were su...
Saved in:
Main Authors: | , |
---|---|
Format: | text |
Language: | English |
Published: |
Animo Repository
2015
|
Subjects: | |
Online Access: | https://animorepository.dlsu.edu.ph/etd_bachelors/14901 |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Institution: | De La Salle University |
Language: | English |
id |
oai:animorepository.dlsu.edu.ph:etd_bachelors-6276 |
---|---|
record_format |
eprints |
spelling |
oai:animorepository.dlsu.edu.ph:etd_bachelors-62762021-05-12T07:33:16Z Discrimination of civet and non-civet coffee by linear discriminant analysis (LDA), partial least squares (PLS-DA), and orthogonal projection to latent structures (OPLS-DA) Datinginoo, Madelen R. Losañes, Christine Angelica L. One of the issues faced by coffee traders and consumers is the widespread availability of adulterated civet coffee (kopi luwak) in the market. To address this problem, the industry needs a way to discriminate between civet and non-civet coffee. Metabolomics data consisting of 24 coffee beans were subjected to linear discriminant analysis (LDA), partial least squares – discriminant analysis (PLS-DA), and orthogonal projection to latent structures – discriminant analysis (OPLS-DA). LDA identified isonicotinic acid, 3-hydroxybenzoic acid, arbutin, and propane-1,3-diol NIST as discriminant markers. On the other hand, PLS-DA described three factors highly represented by: (1) sugars and organic acids (2) aroma acids and (3) taste acids as responsible for successful class separation. Lastly, OPLS-DA showed that isonicotinic acid, 5-aminovaleric acid, beta-glutamic acid, pentitol, and urea were the most significant in discriminating the data. All the fitted models yielded 0 misclassification rates. The LDA model exhibited an R2 of 88.56%, while the OPLS-DA and PLS-DA models demonstrated R2Y of 87.9%. Unlike LDA, PLS-DA is not governed by a set of assumptions. The PLS-DA model was also evaluated with a higher Q2 (62.6%) than that of the OPLS-DA model Q2 (51.5%). Hence, among the three discriminant analyses, PLS-DA is the recommended analysis tool for discriminating between civet and non-civet coffee samples. 2015-01-01T08:00:00Z text https://animorepository.dlsu.edu.ph/etd_bachelors/14901 Bachelor's Theses English Animo Repository Coffee--Classification Discriminant analysis Statistics and Probability |
institution |
De La Salle University |
building |
De La Salle University Library |
continent |
Asia |
country |
Philippines Philippines |
content_provider |
De La Salle University Library |
collection |
DLSU Institutional Repository |
language |
English |
topic |
Coffee--Classification Discriminant analysis Statistics and Probability |
spellingShingle |
Coffee--Classification Discriminant analysis Statistics and Probability Datinginoo, Madelen R. Losañes, Christine Angelica L. Discrimination of civet and non-civet coffee by linear discriminant analysis (LDA), partial least squares (PLS-DA), and orthogonal projection to latent structures (OPLS-DA) |
description |
One of the issues faced by coffee traders and consumers is the widespread availability of adulterated civet coffee (kopi luwak) in the market. To address this problem, the industry needs a way to discriminate between civet and non-civet coffee. Metabolomics data consisting of 24 coffee beans were subjected to linear discriminant analysis (LDA), partial least squares – discriminant analysis (PLS-DA), and orthogonal projection to latent structures – discriminant analysis (OPLS-DA). LDA identified isonicotinic acid, 3-hydroxybenzoic acid, arbutin, and propane-1,3-diol NIST as discriminant markers. On the other hand, PLS-DA described three factors highly represented by: (1) sugars and organic acids (2) aroma acids and (3) taste acids as responsible for successful class separation. Lastly, OPLS-DA showed that isonicotinic acid, 5-aminovaleric acid, beta-glutamic acid, pentitol, and urea were the most significant in discriminating the data. All the fitted models yielded 0 misclassification rates. The LDA model exhibited an R2 of 88.56%, while the OPLS-DA and PLS-DA models demonstrated R2Y of 87.9%. Unlike LDA, PLS-DA is not governed by a set of assumptions. The PLS-DA model was also evaluated with a higher Q2 (62.6%) than that of the OPLS-DA model Q2 (51.5%). Hence, among the three discriminant analyses, PLS-DA is the recommended analysis tool for discriminating between civet and non-civet coffee samples. |
format |
text |
author |
Datinginoo, Madelen R. Losañes, Christine Angelica L. |
author_facet |
Datinginoo, Madelen R. Losañes, Christine Angelica L. |
author_sort |
Datinginoo, Madelen R. |
title |
Discrimination of civet and non-civet coffee by linear discriminant analysis (LDA), partial least squares (PLS-DA), and orthogonal projection to latent structures (OPLS-DA) |
title_short |
Discrimination of civet and non-civet coffee by linear discriminant analysis (LDA), partial least squares (PLS-DA), and orthogonal projection to latent structures (OPLS-DA) |
title_full |
Discrimination of civet and non-civet coffee by linear discriminant analysis (LDA), partial least squares (PLS-DA), and orthogonal projection to latent structures (OPLS-DA) |
title_fullStr |
Discrimination of civet and non-civet coffee by linear discriminant analysis (LDA), partial least squares (PLS-DA), and orthogonal projection to latent structures (OPLS-DA) |
title_full_unstemmed |
Discrimination of civet and non-civet coffee by linear discriminant analysis (LDA), partial least squares (PLS-DA), and orthogonal projection to latent structures (OPLS-DA) |
title_sort |
discrimination of civet and non-civet coffee by linear discriminant analysis (lda), partial least squares (pls-da), and orthogonal projection to latent structures (opls-da) |
publisher |
Animo Repository |
publishDate |
2015 |
url |
https://animorepository.dlsu.edu.ph/etd_bachelors/14901 |
_version_ |
1772834716495380480 |