Novel pathophysiological markers are revealed by iTRAQ-based quantitative clinical proteomics approach in vascular dementia

Vascular dementia (VaD) is a leading cause of dementia in the elderly together with Alzheimer's disease with limited treatment options. Poor understanding of the pathophysiology underlying VaD is hindering the development of new therapies. Hence, to unravel its underlying molecular pathology, a...

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Main Authors: Lai, Mitchell K. P., Kalaria, Raj N., Chen, Christopher P., Datta, Arnab, Qian, Jingru, Chong, Ruifen, Francis, Paul, Sze, Siu Kwan
Other Authors: School of Biological Sciences
Format: Article
Language:English
Published: 2014
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Online Access:https://hdl.handle.net/10356/101828
http://hdl.handle.net/10220/18755
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Institution: Nanyang Technological University
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spelling sg-ntu-dr.10356-1018282023-02-28T16:55:48Z Novel pathophysiological markers are revealed by iTRAQ-based quantitative clinical proteomics approach in vascular dementia Lai, Mitchell K. P. Kalaria, Raj N. Chen, Christopher P. Datta, Arnab Qian, Jingru Chong, Ruifen Francis, Paul Sze, Siu Kwan School of Biological Sciences DRNTU::Science::Biological sciences Vascular dementia (VaD) is a leading cause of dementia in the elderly together with Alzheimer's disease with limited treatment options. Poor understanding of the pathophysiology underlying VaD is hindering the development of new therapies. Hence, to unravel its underlying molecular pathology, an iTRAQ-2D-LC–MS/MS strategy was used for quantitative analysis of pooled lysates from Brodmann area 21 of pathologically confirmed cases of VaD and matched non-neurological controls. A total of 144 differentially perturbed proteins out of 2284 confidently identified proteins (false discovery rate = 0.3%) were shortlisted for bioinformatics analysis. Western blot analysis of selected proteins using samples from individual patients (n = 10 per group) showed statistically significant increases in the abundance of SOD1 and NCAM and reduced ATP5A in VaD. This suggested a state of hypometabolism and vascular insufficiency along with an inflammatory condition during VaD. Elevation of SOD1 and increasing trend for iron-storage proteins (FTL, FTH1) may be indicative of an oxidative imbalance that is accompanied by an aberrant iron metabolism. The synaptic proteins did not exhibit a generalized decrease in abundance (e.g. syntaxin) in the VaD subjects. This reported proteome offers a reference data set for future basic or translational studies on VaD. NMRC (Natl Medical Research Council, S’pore) Accepted version 2014-02-04T06:45:35Z 2019-12-06T20:45:10Z 2014-02-04T06:45:35Z 2019-12-06T20:45:10Z 2014 2014 Journal Article Datta, A., Qian, J., Chong, R., Kalaria, R. N., Francis, P., Lai, M. K. P., et. al. (2014) Novel Pathophysiological Markers are Revealed by iTRAQ-based Quantitative Clinical Proteomics Approach in Vascular Dementia. Journal of Proteomics. https://hdl.handle.net/10356/101828 http://hdl.handle.net/10220/18755 10.1016/j.jprot.2014.01.011 24448401 175806 en Journal of proteomics © 2014 Elsevier B.V. This is the author created version of a work that has been peer reviewed and accepted for publication by Journal of Proteomics, Elsevier B.V. It incorporates referee’s comments but changes resulting from the publishing process, such as copyediting, structural formatting, may not be reflected in this document. The published version is available at: [http://dx.doi.org/10.1016/j.jprot.2014.01.011]. application/pdf
institution Nanyang Technological University
building NTU Library
continent Asia
country Singapore
Singapore
content_provider NTU Library
collection DR-NTU
language English
topic DRNTU::Science::Biological sciences
spellingShingle DRNTU::Science::Biological sciences
Lai, Mitchell K. P.
Kalaria, Raj N.
Chen, Christopher P.
Datta, Arnab
Qian, Jingru
Chong, Ruifen
Francis, Paul
Sze, Siu Kwan
Novel pathophysiological markers are revealed by iTRAQ-based quantitative clinical proteomics approach in vascular dementia
description Vascular dementia (VaD) is a leading cause of dementia in the elderly together with Alzheimer's disease with limited treatment options. Poor understanding of the pathophysiology underlying VaD is hindering the development of new therapies. Hence, to unravel its underlying molecular pathology, an iTRAQ-2D-LC–MS/MS strategy was used for quantitative analysis of pooled lysates from Brodmann area 21 of pathologically confirmed cases of VaD and matched non-neurological controls. A total of 144 differentially perturbed proteins out of 2284 confidently identified proteins (false discovery rate = 0.3%) were shortlisted for bioinformatics analysis. Western blot analysis of selected proteins using samples from individual patients (n = 10 per group) showed statistically significant increases in the abundance of SOD1 and NCAM and reduced ATP5A in VaD. This suggested a state of hypometabolism and vascular insufficiency along with an inflammatory condition during VaD. Elevation of SOD1 and increasing trend for iron-storage proteins (FTL, FTH1) may be indicative of an oxidative imbalance that is accompanied by an aberrant iron metabolism. The synaptic proteins did not exhibit a generalized decrease in abundance (e.g. syntaxin) in the VaD subjects. This reported proteome offers a reference data set for future basic or translational studies on VaD.
author2 School of Biological Sciences
author_facet School of Biological Sciences
Lai, Mitchell K. P.
Kalaria, Raj N.
Chen, Christopher P.
Datta, Arnab
Qian, Jingru
Chong, Ruifen
Francis, Paul
Sze, Siu Kwan
format Article
author Lai, Mitchell K. P.
Kalaria, Raj N.
Chen, Christopher P.
Datta, Arnab
Qian, Jingru
Chong, Ruifen
Francis, Paul
Sze, Siu Kwan
author_sort Lai, Mitchell K. P.
title Novel pathophysiological markers are revealed by iTRAQ-based quantitative clinical proteomics approach in vascular dementia
title_short Novel pathophysiological markers are revealed by iTRAQ-based quantitative clinical proteomics approach in vascular dementia
title_full Novel pathophysiological markers are revealed by iTRAQ-based quantitative clinical proteomics approach in vascular dementia
title_fullStr Novel pathophysiological markers are revealed by iTRAQ-based quantitative clinical proteomics approach in vascular dementia
title_full_unstemmed Novel pathophysiological markers are revealed by iTRAQ-based quantitative clinical proteomics approach in vascular dementia
title_sort novel pathophysiological markers are revealed by itraq-based quantitative clinical proteomics approach in vascular dementia
publishDate 2014
url https://hdl.handle.net/10356/101828
http://hdl.handle.net/10220/18755
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