Investigating the solid-state assembly of pharmaceutically-relevant N,N-dimethyl-O-thiocarbamates in the absence of labile hydrogen bonds

There are many active pharmaceutical ingredients that lack N-H, O-H and S-H hydrogen-bond donor functional groups. N,N-disubstituted O-thiocarbamates are examples of molecules that display such a feature. Despite the desirable medicinal properties displayed by some N,N-disubstituted O-thiocarbamates...

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Main Authors: Tan, Davin, Ng, Zi Xuan, Ganguly, Rakesh, Li, Yongxin, Soo, Han Sen, Sharmarke Mohamed, García, Felipe
Other Authors: School of Physical and Mathematical Sciences
Format: Article
Language:English
Published: 2021
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Online Access:https://hdl.handle.net/10356/146290
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spelling sg-ntu-dr.10356-1462902023-02-28T19:52:04Z Investigating the solid-state assembly of pharmaceutically-relevant N,N-dimethyl-O-thiocarbamates in the absence of labile hydrogen bonds Tan, Davin Ng, Zi Xuan Ganguly, Rakesh Li, Yongxin Soo, Han Sen Sharmarke Mohamed García, Felipe School of Physical and Mathematical Sciences Divsion of Chemistry and Biological Chemistry Chemistry Department, Shiv Nadar University, Gautam Buddha Nagar, India 201314 Department of Chemistry, Khalifa University of Science and Technology, PO BOX 127788, Abu Dhabi, United Arab Emirates Engineering Thiocarbamates Hydrogen Bonds There are many active pharmaceutical ingredients that lack N-H, O-H and S-H hydrogen-bond donor functional groups. N,N-disubstituted O-thiocarbamates are examples of molecules that display such a feature. Despite the desirable medicinal properties displayed by some N,N-disubstituted O-thiocarbamates, the study of the solid-state properties of these compounds has been relatively unexplored. Herein, we report the synthesis and analysis of the structures and properties of a series of N,N-dimethyl-O-thiocarbamates, and use X-ray diffraction techniques to gain insight into how these molecules self-assemble in the solid-state. As part of our work, we report for the first time the crystal structure of Tolnaftate, an active pharmaceutical ingredient that is indicated for the treatment of fungal infections. It was observed that the aryl-thiocarbamate C-O bonds are twisted such that the planar aryl and carbamate moieties are orthogonal. Such a non-planar molecular geometry affects the way the molecules pack and crystal structure analyses revealed four general modes in which the molecules can assemble in the solid-state, with some members of the series displaying isostructural relationships. Computational modelling of the cohesive energy densities in the crystals suggests that there is no single stacking type that is associated with greater stability. However, crystals with a combination of high packing index and π···π stacking interactions appear to display large cohesive energy densities. The lack of strong hydrogen bonding interactions in the crystals also leads to relatively low Young’s moduli that are within a narrow range of 10-15 GPa for all 14 crystal structures reported. Agency for Science, Technology and Research (A*STAR) Accepted version F.G. would like to thank A*STAR AME IRG (A1783c0003) and a NTU start-up grant (M4080552) for financial support. H.S.S. is grateful for the Singapore Ministry of Education Academic Research Fund Tier 1 grants RG 111/18 and RT 05/19. H.S.S. also acknowledges that this project is supported by A*STAR under the AME IRG grants A1783c0003, A1783c0002, and A1783c0007 D.T. would like to thank A*STAR for a postdoctoral research fellowship. .M. would like to acknowledge Khalifa University for financial support under the CIRA program (Project Code: CIRA-2018-068). The theoretical calculations were performed using the high-performance computing clusters of Khalifa University and the authors would like to acknowledge the support of the research computing department. 2021-02-05T05:02:22Z 2021-02-05T05:02:22Z 2020 Journal Article Tan, D., Ng, Z. X., Ganguly, R., Li, Y., Soo, H. S., Sharmarke Mohamed, & García, F. (2020). Investigating the solid-state assembly of pharmaceutically-relevant N,N-dimethyl-O-thiocarbamates in the absence of labile hydrogen bonds. CrystEngComm, 22, 8290-8298. doi:10.1039/D0CE01336F 1466-8033 https://hdl.handle.net/10356/146290 10.1039/D0CE01336F 22 8290 8298 en RG 111/18 A1783c0003 A1783c0002 A1783c0007 M4080552 CIRA-2018-068 CrystEngComm © 2020 The Author(s) (Royal Society of Chemistry). All rights reserved. This paper was published in CrystEngComm and is made available with permission of The Author(s) (Royal Society of Chemistry). application/pdf application/pdf
institution Nanyang Technological University
building NTU Library
continent Asia
country Singapore
Singapore
content_provider NTU Library
collection DR-NTU
language English
topic Engineering
Thiocarbamates
Hydrogen Bonds
spellingShingle Engineering
Thiocarbamates
Hydrogen Bonds
Tan, Davin
Ng, Zi Xuan
Ganguly, Rakesh
Li, Yongxin
Soo, Han Sen
Sharmarke Mohamed
García, Felipe
Investigating the solid-state assembly of pharmaceutically-relevant N,N-dimethyl-O-thiocarbamates in the absence of labile hydrogen bonds
description There are many active pharmaceutical ingredients that lack N-H, O-H and S-H hydrogen-bond donor functional groups. N,N-disubstituted O-thiocarbamates are examples of molecules that display such a feature. Despite the desirable medicinal properties displayed by some N,N-disubstituted O-thiocarbamates, the study of the solid-state properties of these compounds has been relatively unexplored. Herein, we report the synthesis and analysis of the structures and properties of a series of N,N-dimethyl-O-thiocarbamates, and use X-ray diffraction techniques to gain insight into how these molecules self-assemble in the solid-state. As part of our work, we report for the first time the crystal structure of Tolnaftate, an active pharmaceutical ingredient that is indicated for the treatment of fungal infections. It was observed that the aryl-thiocarbamate C-O bonds are twisted such that the planar aryl and carbamate moieties are orthogonal. Such a non-planar molecular geometry affects the way the molecules pack and crystal structure analyses revealed four general modes in which the molecules can assemble in the solid-state, with some members of the series displaying isostructural relationships. Computational modelling of the cohesive energy densities in the crystals suggests that there is no single stacking type that is associated with greater stability. However, crystals with a combination of high packing index and π···π stacking interactions appear to display large cohesive energy densities. The lack of strong hydrogen bonding interactions in the crystals also leads to relatively low Young’s moduli that are within a narrow range of 10-15 GPa for all 14 crystal structures reported.
author2 School of Physical and Mathematical Sciences
author_facet School of Physical and Mathematical Sciences
Tan, Davin
Ng, Zi Xuan
Ganguly, Rakesh
Li, Yongxin
Soo, Han Sen
Sharmarke Mohamed
García, Felipe
format Article
author Tan, Davin
Ng, Zi Xuan
Ganguly, Rakesh
Li, Yongxin
Soo, Han Sen
Sharmarke Mohamed
García, Felipe
author_sort Tan, Davin
title Investigating the solid-state assembly of pharmaceutically-relevant N,N-dimethyl-O-thiocarbamates in the absence of labile hydrogen bonds
title_short Investigating the solid-state assembly of pharmaceutically-relevant N,N-dimethyl-O-thiocarbamates in the absence of labile hydrogen bonds
title_full Investigating the solid-state assembly of pharmaceutically-relevant N,N-dimethyl-O-thiocarbamates in the absence of labile hydrogen bonds
title_fullStr Investigating the solid-state assembly of pharmaceutically-relevant N,N-dimethyl-O-thiocarbamates in the absence of labile hydrogen bonds
title_full_unstemmed Investigating the solid-state assembly of pharmaceutically-relevant N,N-dimethyl-O-thiocarbamates in the absence of labile hydrogen bonds
title_sort investigating the solid-state assembly of pharmaceutically-relevant n,n-dimethyl-o-thiocarbamates in the absence of labile hydrogen bonds
publishDate 2021
url https://hdl.handle.net/10356/146290
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