A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data

• Main Authors: He X., Chen C.-C., Hong F., Fang F., Sinha S., Ng H.-H., Zhong S.
• Other Authors: BIOLOGY (NU)
• Format: Article
• Published: 2019
• Subjects: transcription factor NANOG; Drosophila protein; homeodomain protein; transcription factor; article; binding affinity; binding site; cis isomer; computer prediction; controlled study; DNA binding; DNA microarray; Drosophila; Drosophila melanogaster; drosophila pseudoobscura; embryonic stem cell; gene control; gene interaction; gene location; gene targeting; genetic analysis; genetic association; genetic conservation; genetic transcription; genome; protein motif; quantitative study; regulatory sequence; sequence homology; theoretical model; animal; biological model; biology; biophysics; chromatin immunoprecipitation; genetic database; genetics; metabolism; mouse; nucleotide sequence; protein binding; receiver operating characteristic; reproducibility; Drosophila pseudoobscura; Animals; Base Sequence; Binding Sites; Biophysical Phenomena; Chromatin Immunoprecipitation; Computational Biology; Databases, Genetic; Drosophila Proteins; Genome; Homeodomain Proteins; Mice; Models, Genetic; Protein Binding; Reproducibility of Results; ROC Curve; Transcription Factors
• Online Access: https://scholarbank.nus.edu.sg/handle/10635/161824
• Institution: National University of Singapore

10.1371/journal.pone.0008155