A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data

10.1371/journal.pone.0008155

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Main Authors:	He X., Chen C.-C., Hong F., Fang F., Sinha S., Ng H.-H., Zhong S.
Other Authors:	BIOLOGY (NU)
Format:	Article
Published:	2019
Subjects:	transcription factor NANOG Drosophila protein homeodomain protein transcription factor article binding affinity binding site cis isomer computer prediction controlled study DNA binding DNA microarray Drosophila Drosophila melanogaster drosophila pseudoobscura embryonic stem cell gene control gene interaction gene location gene targeting genetic analysis genetic association genetic conservation genetic transcription genome protein motif quantitative study regulatory sequence sequence homology theoretical model animal biological model biology biophysics chromatin immunoprecipitation genetic database genetics metabolism mouse nucleotide sequence protein binding receiver operating characteristic reproducibility Drosophila pseudoobscura Animals Base Sequence Binding Sites Biophysical Phenomena Chromatin Immunoprecipitation Computational Biology Databases, Genetic Drosophila Proteins Genome Homeodomain Proteins Mice Models, Genetic Protein Binding Reproducibility of Results ROC Curve Transcription Factors
Online Access:	https://scholarbank.nus.edu.sg/handle/10635/161824
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Institution:	National University of Singapore

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spelling	sg-nus-scholar.10635-1618242024-04-03T10:36:49Z A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data He X. Chen C.-C. Hong F. Fang F. Sinha S. Ng H.-H. Zhong S. BIOLOGY (NU) BIOLOGICAL SCIENCES transcription factor NANOG Drosophila protein homeodomain protein transcription factor article binding affinity binding site cis isomer computer prediction controlled study DNA binding DNA microarray Drosophila Drosophila melanogaster drosophila pseudoobscura embryonic stem cell gene control gene interaction gene location gene targeting genetic analysis genetic association genetic conservation genetic transcription genome protein motif quantitative study regulatory sequence sequence homology theoretical model animal biological model biology biophysics chromatin immunoprecipitation genetic database genetics genome metabolism mouse nucleotide sequence protein binding receiver operating characteristic reproducibility Drosophila melanogaster Drosophila pseudoobscura Animals Base Sequence Binding Sites Biophysical Phenomena Chromatin Immunoprecipitation Computational Biology Databases, Genetic Drosophila melanogaster Drosophila Proteins Genome Homeodomain Proteins Mice Models, Genetic Protein Binding Reproducibility of Results ROC Curve Transcription Factors 10.1371/journal.pone.0008155 PLoS ONE 4 12 e8155 2019-11-07T08:15:33Z 2019-11-07T08:15:33Z 2009 Article He X., Chen C.-C., Hong F., Fang F., Sinha S., Ng H.-H., Zhong S. (2009). A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data. PLoS ONE 4 (12) : e8155. ScholarBank@NUS Repository. https://doi.org/10.1371/journal.pone.0008155 19326203 https://scholarbank.nus.edu.sg/handle/10635/161824 Attribution 4.0 International http://creativecommons.org/licenses/by/4.0/ Unpaywall 20191101
institution	National University of Singapore
building	NUS Library
continent	Asia
country	Singapore Singapore
content_provider	NUS Library
collection	ScholarBank@NUS
topic	transcription factor NANOG Drosophila protein homeodomain protein transcription factor article binding affinity binding site cis isomer computer prediction controlled study DNA binding DNA microarray Drosophila Drosophila melanogaster drosophila pseudoobscura embryonic stem cell gene control gene interaction gene location gene targeting genetic analysis genetic association genetic conservation genetic transcription genome protein motif quantitative study regulatory sequence sequence homology theoretical model animal biological model biology biophysics chromatin immunoprecipitation genetic database genetics genome metabolism mouse nucleotide sequence protein binding receiver operating characteristic reproducibility Drosophila melanogaster Drosophila pseudoobscura Animals Base Sequence Binding Sites Biophysical Phenomena Chromatin Immunoprecipitation Computational Biology Databases, Genetic Drosophila melanogaster Drosophila Proteins Genome Homeodomain Proteins Mice Models, Genetic Protein Binding Reproducibility of Results ROC Curve Transcription Factors
spellingShingle	transcription factor NANOG Drosophila protein homeodomain protein transcription factor article binding affinity binding site cis isomer computer prediction controlled study DNA binding DNA microarray Drosophila Drosophila melanogaster drosophila pseudoobscura embryonic stem cell gene control gene interaction gene location gene targeting genetic analysis genetic association genetic conservation genetic transcription genome protein motif quantitative study regulatory sequence sequence homology theoretical model animal biological model biology biophysics chromatin immunoprecipitation genetic database genetics genome metabolism mouse nucleotide sequence protein binding receiver operating characteristic reproducibility Drosophila melanogaster Drosophila pseudoobscura Animals Base Sequence Binding Sites Biophysical Phenomena Chromatin Immunoprecipitation Computational Biology Databases, Genetic Drosophila melanogaster Drosophila Proteins Genome Homeodomain Proteins Mice Models, Genetic Protein Binding Reproducibility of Results ROC Curve Transcription Factors He X. Chen C.-C. Hong F. Fang F. Sinha S. Ng H.-H. Zhong S. A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data
description	10.1371/journal.pone.0008155
author2	BIOLOGY (NU)
author_facet	BIOLOGY (NU) He X. Chen C.-C. Hong F. Fang F. Sinha S. Ng H.-H. Zhong S.
format	Article
author	He X. Chen C.-C. Hong F. Fang F. Sinha S. Ng H.-H. Zhong S.
author_sort	He X.
title	A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data
title_short	A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data
title_full	A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data
title_fullStr	A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data
title_full_unstemmed	A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data
title_sort	biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data
publishDate	2019
url	https://scholarbank.nus.edu.sg/handle/10635/161824
_version_	1795374115785277440

A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data

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