A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data
10.1371/journal.pone.0008155
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sg-nus-scholar.10635-1618242024-04-03T10:36:49Z A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data He X. Chen C.-C. Hong F. Fang F. Sinha S. Ng H.-H. Zhong S. BIOLOGY (NU) BIOLOGICAL SCIENCES transcription factor NANOG Drosophila protein homeodomain protein transcription factor article binding affinity binding site cis isomer computer prediction controlled study DNA binding DNA microarray Drosophila Drosophila melanogaster drosophila pseudoobscura embryonic stem cell gene control gene interaction gene location gene targeting genetic analysis genetic association genetic conservation genetic transcription genome protein motif quantitative study regulatory sequence sequence homology theoretical model animal biological model biology biophysics chromatin immunoprecipitation genetic database genetics genome metabolism mouse nucleotide sequence protein binding receiver operating characteristic reproducibility Drosophila melanogaster Drosophila pseudoobscura Animals Base Sequence Binding Sites Biophysical Phenomena Chromatin Immunoprecipitation Computational Biology Databases, Genetic Drosophila melanogaster Drosophila Proteins Genome Homeodomain Proteins Mice Models, Genetic Protein Binding Reproducibility of Results ROC Curve Transcription Factors 10.1371/journal.pone.0008155 PLoS ONE 4 12 e8155 2019-11-07T08:15:33Z 2019-11-07T08:15:33Z 2009 Article He X., Chen C.-C., Hong F., Fang F., Sinha S., Ng H.-H., Zhong S. (2009). A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data. PLoS ONE 4 (12) : e8155. ScholarBank@NUS Repository. https://doi.org/10.1371/journal.pone.0008155 19326203 https://scholarbank.nus.edu.sg/handle/10635/161824 Attribution 4.0 International http://creativecommons.org/licenses/by/4.0/ Unpaywall 20191101 |
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transcription factor NANOG Drosophila protein homeodomain protein transcription factor article binding affinity binding site cis isomer computer prediction controlled study DNA binding DNA microarray Drosophila Drosophila melanogaster drosophila pseudoobscura embryonic stem cell gene control gene interaction gene location gene targeting genetic analysis genetic association genetic conservation genetic transcription genome protein motif quantitative study regulatory sequence sequence homology theoretical model animal biological model biology biophysics chromatin immunoprecipitation genetic database genetics genome metabolism mouse nucleotide sequence protein binding receiver operating characteristic reproducibility Drosophila melanogaster Drosophila pseudoobscura Animals Base Sequence Binding Sites Biophysical Phenomena Chromatin Immunoprecipitation Computational Biology Databases, Genetic Drosophila melanogaster Drosophila Proteins Genome Homeodomain Proteins Mice Models, Genetic Protein Binding Reproducibility of Results ROC Curve Transcription Factors |
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transcription factor NANOG Drosophila protein homeodomain protein transcription factor article binding affinity binding site cis isomer computer prediction controlled study DNA binding DNA microarray Drosophila Drosophila melanogaster drosophila pseudoobscura embryonic stem cell gene control gene interaction gene location gene targeting genetic analysis genetic association genetic conservation genetic transcription genome protein motif quantitative study regulatory sequence sequence homology theoretical model animal biological model biology biophysics chromatin immunoprecipitation genetic database genetics genome metabolism mouse nucleotide sequence protein binding receiver operating characteristic reproducibility Drosophila melanogaster Drosophila pseudoobscura Animals Base Sequence Binding Sites Biophysical Phenomena Chromatin Immunoprecipitation Computational Biology Databases, Genetic Drosophila melanogaster Drosophila Proteins Genome Homeodomain Proteins Mice Models, Genetic Protein Binding Reproducibility of Results ROC Curve Transcription Factors He X. Chen C.-C. Hong F. Fang F. Sinha S. Ng H.-H. Zhong S. A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data |
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10.1371/journal.pone.0008155 |
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BIOLOGY (NU) |
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BIOLOGY (NU) He X. Chen C.-C. Hong F. Fang F. Sinha S. Ng H.-H. Zhong S. |
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Article |
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He X. Chen C.-C. Hong F. Fang F. Sinha S. Ng H.-H. Zhong S. |
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He X. |
title |
A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data |
title_short |
A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data |
title_full |
A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data |
title_fullStr |
A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data |
title_full_unstemmed |
A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data |
title_sort |
biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data |
publishDate |
2019 |
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https://scholarbank.nus.edu.sg/handle/10635/161824 |
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1795374115785277440 |