Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences

10.1186/s13059-021-02453-5

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Main Authors:	Cao, Fan, Zhang, Yu, Cai, Yichao, Animesh, Sambhavi, Zhang, Ying, Akincilar, Semih Can, Loh, Yan Ping, Li, Xinya, Chng, Wee Joo, Tergaonkar, Vinay, Kwoh, Chee Keong, Fullwood, Melissa J
Other Authors:	CANCER SCIENCE INSTITUTE OF SINGAPORE
Format:	Article
Language:	English
Published:	BMC 2021
Subjects:	Science & Technology Life Sciences & Biomedicine Biotechnology & Applied Microbiology Genetics & Heredity Machine learning 3D genome organization Chromatin interactions ChIA-PET Hi-C DNA sequence Leukemia Bioinformatics READ ALIGNMENT CTCF GENOME EXPRESSION ORGANIZATION PRINCIPLES SURROGATE TOPOLOGY DOMAINS MARKERS
Online Access:	https://scholarbank.nus.edu.sg/handle/10635/207756
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Institution:	National University of Singapore
Language:	English

id	sg-nus-scholar.10635-207756
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spelling	sg-nus-scholar.10635-2077562024-11-14T22:35:32Z Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences Cao, Fan Zhang, Yu Cai, Yichao Animesh, Sambhavi Zhang, Ying Akincilar, Semih Can Loh, Yan Ping Li, Xinya Chng, Wee Joo Tergaonkar, Vinay Kwoh, Chee Keong Fullwood, Melissa J CANCER SCIENCE INSTITUTE OF SINGAPORE PATHOLOGY Prof Wee Joo Chng Science & Technology Life Sciences & Biomedicine Biotechnology & Applied Microbiology Genetics & Heredity Machine learning 3D genome organization Chromatin interactions ChIA-PET Hi-C DNA sequence Leukemia Bioinformatics READ ALIGNMENT CTCF GENOME EXPRESSION ORGANIZATION PRINCIPLES SURROGATE TOPOLOGY DOMAINS MARKERS 10.1186/s13059-021-02453-5 GENOME BIOLOGY 22 1 2021-11-24T03:41:37Z 2021-11-24T03:41:37Z 2021-08-16 2021-11-22T06:18:57Z Article Cao, Fan, Zhang, Yu, Cai, Yichao, Animesh, Sambhavi, Zhang, Ying, Akincilar, Semih Can, Loh, Yan Ping, Li, Xinya, Chng, Wee Joo, Tergaonkar, Vinay, Kwoh, Chee Keong, Fullwood, Melissa J (2021-08-16). Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences. GENOME BIOLOGY 22 (1). ScholarBank@NUS Repository. https://doi.org/10.1186/s13059-021-02453-5 1474760X https://scholarbank.nus.edu.sg/handle/10635/207756 en BMC Elements
institution	National University of Singapore
building	NUS Library
continent	Asia
country	Singapore Singapore
content_provider	NUS Library
collection	ScholarBank@NUS
language	English
topic	Science & Technology Life Sciences & Biomedicine Biotechnology & Applied Microbiology Genetics & Heredity Machine learning 3D genome organization Chromatin interactions ChIA-PET Hi-C DNA sequence Leukemia Bioinformatics READ ALIGNMENT CTCF GENOME EXPRESSION ORGANIZATION PRINCIPLES SURROGATE TOPOLOGY DOMAINS MARKERS
spellingShingle	Science & Technology Life Sciences & Biomedicine Biotechnology & Applied Microbiology Genetics & Heredity Machine learning 3D genome organization Chromatin interactions ChIA-PET Hi-C DNA sequence Leukemia Bioinformatics READ ALIGNMENT CTCF GENOME EXPRESSION ORGANIZATION PRINCIPLES SURROGATE TOPOLOGY DOMAINS MARKERS Cao, Fan Zhang, Yu Cai, Yichao Animesh, Sambhavi Zhang, Ying Akincilar, Semih Can Loh, Yan Ping Li, Xinya Chng, Wee Joo Tergaonkar, Vinay Kwoh, Chee Keong Fullwood, Melissa J Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences
description	10.1186/s13059-021-02453-5
author2	CANCER SCIENCE INSTITUTE OF SINGAPORE
author_facet	CANCER SCIENCE INSTITUTE OF SINGAPORE Cao, Fan Zhang, Yu Cai, Yichao Animesh, Sambhavi Zhang, Ying Akincilar, Semih Can Loh, Yan Ping Li, Xinya Chng, Wee Joo Tergaonkar, Vinay Kwoh, Chee Keong Fullwood, Melissa J
format	Article
author	Cao, Fan Zhang, Yu Cai, Yichao Animesh, Sambhavi Zhang, Ying Akincilar, Semih Can Loh, Yan Ping Li, Xinya Chng, Wee Joo Tergaonkar, Vinay Kwoh, Chee Keong Fullwood, Melissa J
author_sort	Cao, Fan
title	Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences
title_short	Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences
title_full	Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences
title_fullStr	Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences
title_full_unstemmed	Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences
title_sort	chromatin interaction neural network (chinn): a machine learning-based method for predicting chromatin interactions from dna sequences
publisher	BMC
publishDate	2021
url	https://scholarbank.nus.edu.sg/handle/10635/207756
_version_	1821229754193281024

Chromatin interaction neural network (ChINN): a machine learning-based method for predicting chromatin interactions from DNA sequences

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