Screening of hepatitis C NS5B polymerase inhibitors containing benzothiadiazine core: a steered molecular dynamics
© 2016 Informa UK Limited, trading as Taylor & Francis Group. Hepatic C virus (HCV) is a global health problem, resulting in liver cirrhosis and inflammation that can develop to hepatocellular carcinoma and fatality. The NS5B polymerase of HCV plays an important role in viral RNA replication p...
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th-cmuir.6653943832-463822018-04-25T07:23:25Z Screening of hepatitis C NS5B polymerase inhibitors containing benzothiadiazine core: a steered molecular dynamics Bodee Nutho Arthitaya Meeprasert Methat Chulapa Nawee Kungwan Thanyada Rungrotmongkol Agricultural and Biological Sciences © 2016 Informa UK Limited, trading as Taylor & Francis Group. Hepatic C virus (HCV) is a global health problem, resulting in liver cirrhosis and inflammation that can develop to hepatocellular carcinoma and fatality. The NS5B polymerase of HCV plays an important role in viral RNA replication process, making it an attractive therapeutic target for design and development of anti-HCV drugs. To search new potent compounds against the HCV NS5B polymerase, the molecular docking and the steered molecular dynamics (SMD) simulation techniques were performed. The potential potent inhibitors of the NS5B polymerase were screened out from the ZINC database using structural similarity search and molecular docking technique. Five top-hit compounds (the ZINC compounds 49888724, 49054741, 49777239, 49793673, and 49780355) were then studied by the SMD simulations based on the hypothesis that a high rupture force relates to a high binding efficiency. The results demonstrated that the ZINC compound 49888724 had a greater maximum rupture force, reflecting a good binding strength and inhibitory potency than known inhibitors and the rest four ZINC compounds. Therefore, our finding indicated that the ZINC compound 49888724 is a potential candidate to be a novel NS5B inhibitor for further design. Besides, the van der Waals interaction could be considered as the main contribution for stabilizing the NS5B-ligand complex. 2018-04-25T06:54:06Z 2018-04-25T06:54:06Z 2017-06-11 Journal 15380254 07391102 2-s2.0-84976328529 10.1080/07391102.2016.1193444 https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84976328529&origin=inward http://cmuir.cmu.ac.th/jspui/handle/6653943832/46382 |
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Agricultural and Biological Sciences Bodee Nutho Arthitaya Meeprasert Methat Chulapa Nawee Kungwan Thanyada Rungrotmongkol Screening of hepatitis C NS5B polymerase inhibitors containing benzothiadiazine core: a steered molecular dynamics |
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© 2016 Informa UK Limited, trading as Taylor & Francis Group. Hepatic C virus (HCV) is a global health problem, resulting in liver cirrhosis and inflammation that can develop to hepatocellular carcinoma and fatality. The NS5B polymerase of HCV plays an important role in viral RNA replication process, making it an attractive therapeutic target for design and development of anti-HCV drugs. To search new potent compounds against the HCV NS5B polymerase, the molecular docking and the steered molecular dynamics (SMD) simulation techniques were performed. The potential potent inhibitors of the NS5B polymerase were screened out from the ZINC database using structural similarity search and molecular docking technique. Five top-hit compounds (the ZINC compounds 49888724, 49054741, 49777239, 49793673, and 49780355) were then studied by the SMD simulations based on the hypothesis that a high rupture force relates to a high binding efficiency. The results demonstrated that the ZINC compound 49888724 had a greater maximum rupture force, reflecting a good binding strength and inhibitory potency than known inhibitors and the rest four ZINC compounds. Therefore, our finding indicated that the ZINC compound 49888724 is a potential candidate to be a novel NS5B inhibitor for further design. Besides, the van der Waals interaction could be considered as the main contribution for stabilizing the NS5B-ligand complex. |
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Bodee Nutho Arthitaya Meeprasert Methat Chulapa Nawee Kungwan Thanyada Rungrotmongkol |
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Bodee Nutho Arthitaya Meeprasert Methat Chulapa Nawee Kungwan Thanyada Rungrotmongkol |
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Bodee Nutho |
title |
Screening of hepatitis C NS5B polymerase inhibitors containing benzothiadiazine core: a steered molecular dynamics |
title_short |
Screening of hepatitis C NS5B polymerase inhibitors containing benzothiadiazine core: a steered molecular dynamics |
title_full |
Screening of hepatitis C NS5B polymerase inhibitors containing benzothiadiazine core: a steered molecular dynamics |
title_fullStr |
Screening of hepatitis C NS5B polymerase inhibitors containing benzothiadiazine core: a steered molecular dynamics |
title_full_unstemmed |
Screening of hepatitis C NS5B polymerase inhibitors containing benzothiadiazine core: a steered molecular dynamics |
title_sort |
screening of hepatitis c ns5b polymerase inhibitors containing benzothiadiazine core: a steered molecular dynamics |
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2018 |
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https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84976328529&origin=inward http://cmuir.cmu.ac.th/jspui/handle/6653943832/46382 |
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