Sensitive, simultaneous quantitation of two unlabeled DNA targets using a magnetic nanoparticle-enzyme sandwich assay

We report herein the development of a simple, sensitive colorimetric magnetic nanoparticle (MNP)-enzyme-based DNA sandwich assay that is suitable for simultaneous, label-free quantitation of two DNA targets down to 50 fM level. It can also effectively discriminate single-nucleotide polymorphisms (SN...

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Main Authors: Yue Zhang, Chalermchai Pilapong, Yuan Guo, Zhenlian Ling, Oscar Cespedes, Philip Quirke, Dejian Zhou
Format: Journal
Published: 2018
Online Access:https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84884996190&origin=inward
http://cmuir.cmu.ac.th/jspui/handle/6653943832/47625
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Institution: Chiang Mai University
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spelling th-cmuir.6653943832-476252018-04-25T08:42:06Z Sensitive, simultaneous quantitation of two unlabeled DNA targets using a magnetic nanoparticle-enzyme sandwich assay Yue Zhang Chalermchai Pilapong Yuan Guo Zhenlian Ling Oscar Cespedes Philip Quirke Dejian Zhou We report herein the development of a simple, sensitive colorimetric magnetic nanoparticle (MNP)-enzyme-based DNA sandwich assay that is suitable for simultaneous, label-free quantitation of two DNA targets down to 50 fM level. It can also effectively discriminate single-nucleotide polymorphisms (SNPs) in genes associated with human cancers (KRAS codon 12/13 SNPs). This assay uses a pair of specific DNA probes, one being covalently conjugated to an MNP for target capture and the other being linked to an enzyme for signal amplification, to sandwich a DNA target, allowing for convenient magnetic separation and subsequent efficient enzymatic signal amplification for high sensitivity. Careful optimization of the MNP surfaces and assay conditions greatly reduced the background, allowing for sensitive, specific detection of as little as 5 amol (50 fM in 100 μL) of target DNA. Mo reover, this sensor is robust, it can effectively discriminate cancer-specific SNPs against the wild-type noncancer target, and it works efficiently in 10% human serum. Furthermore, this sensor can simultaneously quantitate two different DNA targets by using two pairs of unique capture- and signal-DNA probes specific for each target. This general, simple, and sensitive DNA sensor appears to be well-suited for a wide range of genetics-based biosensing and diagnostic applications. © 2013 American Chemical Society. 2018-04-25T08:42:06Z 2018-04-25T08:42:06Z 2013-10-01 Journal 15206882 00032700 2-s2.0-84884996190 10.1021/ac402081u https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84884996190&origin=inward http://cmuir.cmu.ac.th/jspui/handle/6653943832/47625
institution Chiang Mai University
building Chiang Mai University Library
country Thailand
collection CMU Intellectual Repository
description We report herein the development of a simple, sensitive colorimetric magnetic nanoparticle (MNP)-enzyme-based DNA sandwich assay that is suitable for simultaneous, label-free quantitation of two DNA targets down to 50 fM level. It can also effectively discriminate single-nucleotide polymorphisms (SNPs) in genes associated with human cancers (KRAS codon 12/13 SNPs). This assay uses a pair of specific DNA probes, one being covalently conjugated to an MNP for target capture and the other being linked to an enzyme for signal amplification, to sandwich a DNA target, allowing for convenient magnetic separation and subsequent efficient enzymatic signal amplification for high sensitivity. Careful optimization of the MNP surfaces and assay conditions greatly reduced the background, allowing for sensitive, specific detection of as little as 5 amol (50 fM in 100 μL) of target DNA. Mo reover, this sensor is robust, it can effectively discriminate cancer-specific SNPs against the wild-type noncancer target, and it works efficiently in 10% human serum. Furthermore, this sensor can simultaneously quantitate two different DNA targets by using two pairs of unique capture- and signal-DNA probes specific for each target. This general, simple, and sensitive DNA sensor appears to be well-suited for a wide range of genetics-based biosensing and diagnostic applications. © 2013 American Chemical Society.
format Journal
author Yue Zhang
Chalermchai Pilapong
Yuan Guo
Zhenlian Ling
Oscar Cespedes
Philip Quirke
Dejian Zhou
spellingShingle Yue Zhang
Chalermchai Pilapong
Yuan Guo
Zhenlian Ling
Oscar Cespedes
Philip Quirke
Dejian Zhou
Sensitive, simultaneous quantitation of two unlabeled DNA targets using a magnetic nanoparticle-enzyme sandwich assay
author_facet Yue Zhang
Chalermchai Pilapong
Yuan Guo
Zhenlian Ling
Oscar Cespedes
Philip Quirke
Dejian Zhou
author_sort Yue Zhang
title Sensitive, simultaneous quantitation of two unlabeled DNA targets using a magnetic nanoparticle-enzyme sandwich assay
title_short Sensitive, simultaneous quantitation of two unlabeled DNA targets using a magnetic nanoparticle-enzyme sandwich assay
title_full Sensitive, simultaneous quantitation of two unlabeled DNA targets using a magnetic nanoparticle-enzyme sandwich assay
title_fullStr Sensitive, simultaneous quantitation of two unlabeled DNA targets using a magnetic nanoparticle-enzyme sandwich assay
title_full_unstemmed Sensitive, simultaneous quantitation of two unlabeled DNA targets using a magnetic nanoparticle-enzyme sandwich assay
title_sort sensitive, simultaneous quantitation of two unlabeled dna targets using a magnetic nanoparticle-enzyme sandwich assay
publishDate 2018
url https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84884996190&origin=inward
http://cmuir.cmu.ac.th/jspui/handle/6653943832/47625
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