Identification of amino acid residues of a designed ankyrin repeat protein potentially involved in intermolecular interactions with CD4: Analysis by molecular dynamics simulations

Identification of amino acid residues of a designed ankyrin repeat protein potentially involved in intermolecular interactions with CD4: Analysis by molecular dynamics simulations

We applied molecular dynamics simulations to investigate the binding properties of a designed ankyrin repeat protein, the DARPin-CD4 complex. DARPin 23.2 has been reported to disturb the human immunodeficiency virus (HIV) viral entry process by Schweizer et al. The protein docking simulation was ana...

Saved in:

書目詳細資料
Main Authors:	Piyarat Nimmanpipug, Chalermpon Khampa, Vannajan Sanghiran Lee, Sawitree Nangola, Chatchai Tayapiwatana
格式:	雜誌
出版:	2018
主題:	Chemistry Computer Science Materials Science
在線閱讀:	https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=80053909179&origin=inward http://cmuir.cmu.ac.th/jspui/handle/6653943832/49812
標簽:	添加標簽沒有標簽, 成為第一個標記此記錄!

相似書籍

Identification of amino acid residues of a designed ankyrin repeat protein potentially involved in intermolecular interactions with CD4: Analysis by molecular dynamics simulations
由: Nimmanpipug P., et al.
出版: (2014)

Appraisal of translocation pathways for displaying ankyrin repeat protein on phage particles
由: Sawitree Nangola, et al.
出版: (2018)

MATLAB process for validating amino acids on CD4 involving in DARPin binding site from ZDOCK molecular docking database
由: Tanchanok Wisitponchai, et al.
出版: (2018)

MATLAB process for validating amino acids on CD4 involving in DARPin binding site from ZDOCK molecular docking database
由: Tanchanok Wisitponchai, et al.
出版: (2018)

Crystal structure of an antiviral ankyrin targeting the HIV-1 capsid and molecular modeling of the ankyrin-capsid complex
由: Warachai Praditwongwan, et al.
出版: (2018)

An application of capsid-specific artificial ankyrin repeat proteinproduced in E. coli for immunochromatographic assay as a surrogate for antibody
由: Sawitree Nangola, et al.
出版: (2018)

An application of capsid-specific artificial ankyrin repeat proteinproduced in E. coli for immunochromatographic assay as a surrogate for antibody
由: Sawitree Nangola, et al.
出版: (2018)

Appraisal of translocation pathways for displaying ankyrin repeat protein on phage particles
由: Nangola S., et al.
出版: (2017)

Identification of important residues by computational alanine scanning analysis of interaction mechanisms of scFv Anti-p17 complexes based on molecular dynamics simulations
由: Panthip Tue-Ngeun, et al.
出版: (2018)

Deciphering critical amino acid residues to modify and enhance the binding affinity of ankyrin scaffold specific to capsid protein of human immunodeficiency virus type 1
由: Somphot Saoin, et al.
出版: (2018)

Deciphering critical amino acid residues to modify and enhance the binding affinity of ankyrin scaffold specific to capsid protein of human immunodeficiency virus type 1
由: Somphot Saoin, et al.
出版: (2019)

AnkPlex: Algorithmic structure for refinement of near-native ankyrin-protein docking
由: Tanchanok Wisitponchai, et al.
出版: (2018)

Crystal structure of an antiviral ankyrin targeting the HIV-1 capsid and molecular modeling of the ankyrin-capsid complex
由: Warachai Praditwongwan, et al.
出版: (2018)

AnkPlex: Algorithmic structure for refinement of near-native ankyrin-protein docking
由: Tanchanok Wisitponchai, et al.
出版: (2018)

AnkPlex: Algorithmic structure for refinement of near-native ankyrin-protein docking
由: Tanchanok Wisitponchai, et al.
出版: (2018)

Identification of important residues by computational alanine scanning analysis of interaction mechanisms of scFv Anti-p17 complexes based on molecular dynamics simulations
由: Panthip Tue-Ngeun, et al.
出版: (2018)

GPU accelerated molecular dynamics simulations for protein-protein interaction of ankyrin complex
由: Kanchanok Kodchakorn, et al.
出版: (2018)

An application of capsid-specific artificial ankyrin repeat proteinproduced in E. coli for immunochromatographic assay as a surrogate for antibody
由: Nangola S., et al.
出版: (2014)

Pairwise decomposition of residue interaction energies of single chain Fv with HIV-1 p17 epitope variants
由: Vannajan Sanghiran Lee, et al.
出版: (2018)

GPU accelerated molecular dynamics simulations for protein-protein interaction of ankyrin complex
由: Kanchanok Kodchakorn, et al.
出版: (2018)

Antiviral activity of recombinant ankyrin targeted to the capsid domain of HIV-1 Gag polyprotein
由: Sawitree Nangola, et al.
出版: (2018)

Density functional theory calculations of hydrogen dissociative adsorption on platinum-involved alloy surfaces
由: Kanchanok Kodchakorn, et al.
出版: (2018)

Designed antiviral ankyrin – A computational approach to combat HIV-1 via intracellular pathway by targeting the viral capsid of HIV-1
由: Hana Atiqah Abdul Karim, et al.
出版: (2019)

Broad-Spectrum Antiviral Activity of an Ankyrin Repeat Protein on Viral Assembly against Chimeric NL4-3 Viruses Carrying Gag/PR Derived from Circulating Strains among Northern Thai Patients
由: Supachai Sakkhachornphop, et al.
出版: (2018)

Ankyrin repeat domain 1 protein: A functionally pleiotropic protein with cardiac biomarker potential
由: Ling, S.S.M, et al.
出版: (2020)

Coarse-grained modelling and temperature effect on the morphology of PS-b-PI copolymer
由: Natthiti Chiangraeng, et al.
出版: (2019)

Synthesis of molecularly imprinted polymers for nevirapine by dummy template imprinting approach
由: Weeranuch Kareuhanon, et al.
出版: (2018)

Synthesis of molecularly imprinted polymers for nevirapine by dummy template imprinting approach
由: Weeranuch Kareuhanon, et al.
出版: (2018)

Antiviral activity of recombinant ankyrin targeted to the capsid domain of HIV-1 Gag polyprotein
由: Nangola S., et al.
出版: (2014)

Anatase TiO<inf>2</inf> (101) and wurtzite ZnO (001) modified polymer for visible light-photocatalytic efficiency enhancement
由: Thanawat Kantawong, et al.
出版: (2018)

Improved SCFV ANTI-HIV-1 P17 binding affinity guided from the theoretical calculation of pairwise decomposition energies and Computational Alanine Scanning
由: Panthip Tue-Ngeun, et al.
出版: (2018)

Improved SCFV ANTI-HIV-1 P17 binding affinity guided from the theoretical calculation of pairwise decomposition energies and Computational Alanine Scanning
由: Panthip Tue-Ngeun, et al.
出版: (2018)

The VP1 structural protein of enterovirus 71 interacts with human ornithine decarboxylase and gene trap ankyrin repeat
由: Yeo, W.M., et al.
出版: (2011)

Estimation of inhibitory effect against tyrosinase activity through homology modeling and molecular docking
由: Daungkamon Nokinsee, et al.
出版: (2018)

Nucleotide binding domain 1 pharmacophore modeling for visualization and analysis of P-glycoprotein–flavonoid molecular interactions
由: Pathomwat Wongrattanakamon, et al.
出版: (2018)

Monte carlo and molecular dynamics simulations of surface modification of DNA interacted with ultra-low-energy carbon atoms
由: Vannajan Sanghiran Lee, et al.
出版: (2018)

AnkPlex: Algorithmic structure for refinement of near-native ankyrin-protein docking
由: Wisitponchai T., et al.
出版: (2017)

Alpha-helicoidal HEAT-like Repeat Proteins (αRep) Selected as Interactors of HIV-1 Nucleocapsid Negatively Interfere with Viral Genome Packaging and Virus Maturation
由: Sudarat Hadpech, et al.
出版: (2018)

DFT study of proton transfer in methyl urocanate and butyl urocanate
由: Janchai Yana, et al.
出版: (2018)

Adhesion improvement via surface functionalization of epoxy-resin base post by low temperature plasma
由: Waleepan Rakitikul, et al.
出版: (2018)