The geographical distribution of allele polymorphisms of Plasmodium vivax in different regions of Thailand

Objective: To investigate the genetic structure of Plasmodium vivax circumsporozoite surface protein (PvCSP) and P. vivax merozoite surface protein 1 (PvMSP1) genes from field isolates of malaria parasites from four different regions of Thailand. Material and Method: The data was collected by cross-...

Full description

Saved in:
Bibliographic Details
Main Authors: Varakorn Kosaisavee, Ian Hastings, Alister Craig, Usa Lek-Uthai
Other Authors: Mahidol University
Format: Article
Published: 2018
Subjects:
Online Access:https://repository.li.mahidol.ac.th/handle/123456789/14434
Tags: Add Tag
No Tags, Be the first to tag this record!
Institution: Mahidol University
id th-mahidol.14434
record_format dspace
spelling th-mahidol.144342018-06-11T11:59:06Z The geographical distribution of allele polymorphisms of Plasmodium vivax in different regions of Thailand Varakorn Kosaisavee Ian Hastings Alister Craig Usa Lek-Uthai Mahidol University Liverpool School of Tropical Medicine Medicine Objective: To investigate the genetic structure of Plasmodium vivax circumsporozoite surface protein (PvCSP) and P. vivax merozoite surface protein 1 (PvMSP1) genes from field isolates of malaria parasites from four different regions of Thailand. Material and Method: The data was collected by cross-sectional survey, consisting of 273 P. vivax infected blood samples from malaria clinics in 4 different border regions of Thailand from February 2008 to February 2009. The dried blood spots were extracted for DNA and Plasmodium species confirmed by species-specific primer sets. PvCSP and PvMSP1 genes were amplified and their population genetics were analyzed by using the Heterozygosity (H E ) formula, F-STAT and LIAN programs. Result: There was considerable variation in the PvMSP1 gene within 2 fragments for which H E was 0.8303, whereas PvCSP showed low H E at 0.1418. Significant differences in allele frequencies between sites were quantified by Fst, Linkage disequilibrium (LD). The results showed PvMSP1 F2; Fst = 0.063, p = 0.07; PvMSP1 F2 RFLP pattern; Fst = 0.154, p = 0.005; PvMSP1 F3; Fst = 0.23, p = 0.005 and the overall loci showed Fst = 0.151, p = 0.005 (Fisher's exact test). All values of Index association (I S A ) were non-significant. There was no evidence of LD within the P. vivax populations. Conclusion: H E at each locus of the PvMSP1 gene showed significant differences in allele frequencies between sites. 2018-06-11T04:59:06Z 2018-06-11T04:59:06Z 2012-12-01 Article Journal of the Medical Association of Thailand. Vol.95, No.SUPPL 6 (2012) 01252208 2-s2.0-84871902831 https://repository.li.mahidol.ac.th/handle/123456789/14434 Mahidol University SCOPUS https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84871902831&origin=inward
institution Mahidol University
building Mahidol University Library
continent Asia
country Thailand
Thailand
content_provider Mahidol University Library
collection Mahidol University Institutional Repository
topic Medicine
spellingShingle Medicine
Varakorn Kosaisavee
Ian Hastings
Alister Craig
Usa Lek-Uthai
The geographical distribution of allele polymorphisms of Plasmodium vivax in different regions of Thailand
description Objective: To investigate the genetic structure of Plasmodium vivax circumsporozoite surface protein (PvCSP) and P. vivax merozoite surface protein 1 (PvMSP1) genes from field isolates of malaria parasites from four different regions of Thailand. Material and Method: The data was collected by cross-sectional survey, consisting of 273 P. vivax infected blood samples from malaria clinics in 4 different border regions of Thailand from February 2008 to February 2009. The dried blood spots were extracted for DNA and Plasmodium species confirmed by species-specific primer sets. PvCSP and PvMSP1 genes were amplified and their population genetics were analyzed by using the Heterozygosity (H E ) formula, F-STAT and LIAN programs. Result: There was considerable variation in the PvMSP1 gene within 2 fragments for which H E was 0.8303, whereas PvCSP showed low H E at 0.1418. Significant differences in allele frequencies between sites were quantified by Fst, Linkage disequilibrium (LD). The results showed PvMSP1 F2; Fst = 0.063, p = 0.07; PvMSP1 F2 RFLP pattern; Fst = 0.154, p = 0.005; PvMSP1 F3; Fst = 0.23, p = 0.005 and the overall loci showed Fst = 0.151, p = 0.005 (Fisher's exact test). All values of Index association (I S A ) were non-significant. There was no evidence of LD within the P. vivax populations. Conclusion: H E at each locus of the PvMSP1 gene showed significant differences in allele frequencies between sites.
author2 Mahidol University
author_facet Mahidol University
Varakorn Kosaisavee
Ian Hastings
Alister Craig
Usa Lek-Uthai
format Article
author Varakorn Kosaisavee
Ian Hastings
Alister Craig
Usa Lek-Uthai
author_sort Varakorn Kosaisavee
title The geographical distribution of allele polymorphisms of Plasmodium vivax in different regions of Thailand
title_short The geographical distribution of allele polymorphisms of Plasmodium vivax in different regions of Thailand
title_full The geographical distribution of allele polymorphisms of Plasmodium vivax in different regions of Thailand
title_fullStr The geographical distribution of allele polymorphisms of Plasmodium vivax in different regions of Thailand
title_full_unstemmed The geographical distribution of allele polymorphisms of Plasmodium vivax in different regions of Thailand
title_sort geographical distribution of allele polymorphisms of plasmodium vivax in different regions of thailand
publishDate 2018
url https://repository.li.mahidol.ac.th/handle/123456789/14434
_version_ 1763497763281043456