Complex sense-antisense architecture of TNFAIP1/POLDIP2 on 17q11.2 represents a novel transcriptional structural-functional gene module involved in breast cancer progression

by Grinchuk, O.V, Motakis, E, Kuznetsov, V.A
Published 2020

How to discriminate between potentially novel and considered biomarkers within molecular signature?

by Ow, G.S., Jenjaroenpun, P., Thiery, J.P., Kuznetsov, V.A.
Published 2014

Meta-analysis of transcriptome reveals let-7b as an unfavorable prognostic biomarker and predicts molecular and clinical subclasses in high-grade serous ovarian carcinoma

by Tang, Z., Ow, G.S., Thiery, J.P., Ivshina, A.V., Kuznetsov, V.A.
Published 2014

Analysis of deep sequencing microRNA expression profile from human embryonic stem cells derived mesenchymal stem cells reveals possible role of let-7 microRNA family in downstream...

by Koh, W, Sheng, C.T, Tan, B, Lee, Q.Y, Kuznetsov, V, Kiang, L.S, Tanavde, V
Published 2020

Genome and transcriptome delineation of two major oncogenic pathways governing invasive ductal breast cancer development

by Aswad, L, Yenamandra, S.P, Ow, G.S, Grinchuk, O, Ivshina, A.V, Kuznetsov, V.A
Published 2020

Benchmarking selected computational gene network growing tools in context of virus-host interactions

by Taye, B, Vaz, C, Tanavde, V, Kuznetsov, V.A, Eisenhaber, F, Sugrue, R.J, Maurer-Stroh, S
Published 2020

Reinforcement of CVD grown multi-walled carbon nanotubes by high temperature annealing

by Elumeeva, K.V, Kuznetsov, V.L, Ischenko, A.V, Smajda, R, Spina, M, Forró, L, Magrez, A
Published 2020

HOXD-AS1 is a novel lncRNA encoded in HOXD cluster and a marker of neuroblastoma progression revealed via integrative analysis of noncoding transcriptome

by Yarmishyn, A.A, Batagov, A.O, Tan, J.Z, Sundaram, G.M, Sampath, P, Kuznetsov, V.A, Kurochkin, I.V
Published 2020

Sense-antisense gene-pairs in breast cancer and associated pathological pathways

by Grinchuk, O.V, Motakis, E, Yenamandra, S.P, Ow, G.S, Jenjaroenpun, P, Tang, Z, Yarmishyn, A.A, Ivshina, A.V, Kuznetsov, V.A
Published 2020

Tumor-adjacent tissue co-expression profile analysis reveals pro-oncogenic ribosomal gene signature for prognosis of resectable hepatocellular carcinoma

by Grinchuk, O.V., Yenamandra, S.P., Iyer, R., Singh, M., Lee, H.K., Lim, K.H., Chow, P.K.-H., Kuznetsov, V.A.
Published 2022

Host gene expression profiling of dengue virus infection in cell lines and patients

by Fink J., Gu F., Ling L., Tolfvenstam T., Olfat F., Chin K.C., Aw P., George J., Kuznetsov V.A., Schreiber M., Vasudevan S.G., Hibberd M.L.
Published 2018

P53-Independent regulation of p21Waf1/Cip1 expression and senescence by PRMT6

by Phalke, S., Mzoughi, S., Bezzi, M., Jennifer, N., Mok, W.C., Low, D.H.P., Thike, A.A., Kuznetsov, V.A., Tan, P.H., Voorhoeve, P.M., Guccione, E.
Published 2014

EGF hijacks miR-198/FSTL1 wound-healing switch and steers a two-pronged pathway toward metastasis

by Sundaram, G.M, Ismail, H.M, Bashir, M, Muhuri, M, Vaz, C, Nama, S, Ow, G.S, Vladimirovna, I.A, Ramalingam, R, Burke, B, Tanavde, V, Kuznetsov, V, Birgitte Lane, E, Sampath, P
Published 2020

Genetic reclassification of histologic grade delineates new clinical subtypes of breast cancer

by Ivshina, A.V., George, J., Senko, O., Mow, B., Putti, T.C., Smeds, J., Lindahl, T., Pawitan, Y., Hall, P., Nordgren, H., Wong, J.E.L., Liu, E.T., Bergh, J., Kuznetsov, V.A., Miller, L.D.
Published 2014

Whole-Genome Mapping of Histone H3 Lys4 and 27 Trimethylations Reveals Distinct Genomic Compartments in Human Embryonic Stem Cells

by Zhao, X.D., Han, X., Chew, J.L., Liu, J., Chiu, K.P., Choo, A., Orlov, Y.L., Sung, W.-K., Shahab, A., Kuznetsov, V.A., Bourque, G., Oh, S., Ruan, Y., Ng, H.-H., Wei, C.-L.
Published 2013

Contrasting expression patterns of coding and noncoding parts of the human genome upon oxidative stress

by Giannakakis, A, Zhang, J, Jenjaroenpun, P, Nama, S, Zainolabidin, N, Aau, M.Y, Yarmishyn, A.A, Vaz, C, Ivshina, A.V, Grinchuk, O.V, Voorhoeve, M, Vardy, L.A, Sampath, P, Kuznetsov, V.A, Kurochkin, I.V, Guccione, E
Published 2020

Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs)

by Ruan, Y., Hong, S.O., Siew, W.C., Kuo, P.C., Xiao, D.Z., Srinivasan, K.G., Yao, F., Chiou, Y.C., Liu, J., Ariyaratne, P., Bin, W.G.W., Kuznetsov, V.A., Shahab, A., Sung, W.-K., Bourque, G., Palanisamy, N., Wei, C.-L.
Published 2013

Whole-genome cartography of estrogen receptor α binding sites

by Lin, C.-Y., Vega, V.B., Thomsen, J.S., Zhang, T., Say, L.K., Xie, M., Kuo, P.C., Lipovich, L., Barnett, D.H., Stossi, F., Yeo, A., George, J., Kuznetsov, V.A., Yew, K.L., Tze, H.C., Palanisamy, N., Miller, L.D., Cheung, E., Katzenellenbogen, B.S., Ruan, Y., Bourque, G., Wei, C.-L., Liu, E.T.
Published 2015

A global map of p53 transcription-factor binding sites in the human genome

by Wei, C.-L., Wu, Q., Vega, V.B., Chiu, K.P., Ng, P., Zhang, T., Shahab, A., Yong, H.C., Fu, Y., Weng, Z., Liu, J., Zhao, X.D., Chew, J.-L., Lee, Y.L., Kuznetsov, V.A., Sung, W.-K., Miller, L.D., Lim, B., Liu, E.T., Yu, Q., Ng, H.-H., Ruan, Y.
Published 2014

The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

by Loh, Y.-H., Wu, Q., Chew, J.-L., Vega, V.B., Zhang, W., Chen, X., Bourque, G., George, J., Leong, B., Liu, J., Wong, K.-Y., Sung, K.W., Lee, C.W.H., Zhao, X.-D., Chiu, K.-P., Lipovich, L., Kuznetsov, V.A., Robson, P., Stanton, L.W., Wei, C.-L., Ruan, Y., Lim, B., Ng, H.-H.
Published 2014