Bioinformatics tools and databases for whole genome sequence analysis of Mycobacterium tuberculosis

by Kiatichai Faksri, Jun Hao Tan, Angkana Chaiprasert, Yik Ying Teo, Rick Twee Hee Ong
Published 2018

Comparisons of whole-genome sequencing and phenotypic drug susceptibility testing for Mycobacterium tuberculosis causing MDR-TB and XDR-TB in Thailand

by Kiatichai Faksri, Orawee Kaewprasert, Rick Twee Hee Ong, Prapat Suriyaphol, Therdsak Prammananan, Yik Ying Teo, Prapaporn Srilohasin, Angkana Chaiprasert
Published 2020

Whole-genome analysis of drug-resistant Mycobacterium tuberculosis reveals novel mutations associated with fluoroquinolone resistance

by Pratchakan Chaiyachat, Angkana Chaiprasert, Ditthawat Nonghanphithak, Saijai Smithtikarn, Phalin Kamolwat, Petchawan Pungrassami, Wipa Reechaipichitkul, Rick Twee Hee Ong, Yik Ying Teo, Kiatichai Faksri
Published 2022

Whole-genome sequencing analysis of serially isolated multi-drug and extensively drug resistant Mycobacterium tuberculosis from Thai patients

by Kiatichai Faksri, Jun Hao Tan, Areeya Disratthakit, Eryu Xia, Therdsak Prammananan, Prapat Suriyaphol, Chiea Chuen Khor, Yik Ying Teo, Rick Twee Hee Ong, Angkana Chaiprasert
Published 2018

Viral quasispecies inference from 454 pyrosequencing

by Wan Ting Poh, Eryu Xia, Kwanrutai Chin-inmanu, Lai Ping Wong, Anthony Y. Cheng, Prida Malasit, Prapat Suriyaphol, Yik Ying Teo, Rick Twee Hee Ong
Published 2018

Genetic signatures of Mycobacterium tuberculosis Nonthaburi genotype revealed by whole genome analysis of isolates from tuberculous meningitis patients in Thailand

by Olabisi Oluwabukola Coker, Angkana Chaiprasert, Chumpol Ngamphiw, Sissades Tongsima, Sanjib Mani Regmi, Taane G. Clark, Rick Twee Hee Ong, Yik Ying Teo, Therdsak Prammananan, Prasit Palittapongarnpim
Published 2018

Dynamics of the fecal microbiome and antimicrobial resistome in commercial piglets during the weaning period

by Prapat Suriyaphol, Jimmy Ka Ho Chiu, Nathamon Yimpring, Paiboon Tunsagool, Wuttichai Mhuantong, Rungtip Chuanchuen, Irina Bessarab, Rohan B.H. Williams, Rick Twee Hee Ong, Gunnaporn Suriyaphol
Published 2022

Epidemiology of Extended-Spectrum Beta-Lactamase and Carbapenemase-Producing Enterobacterales in the Greater Mekong Subregion: A Systematic-Review and Meta-Analysis of Risk Factors...

by Shweta R. Singh, Alvin Kuo Jing Teo, Kiesha Prem, Rick Twee Hee Ong, Elizabeth A. Ashley, H. Rogier van Doorn, Direk Limmathurotsakul, Paul Turner, Li Yang Hsu
Published 2022

Relating knowledge, attitude and practice of antibiotic use to extended-spectrum beta-lactamase-producing Enterobacteriaceae carriage: Results of a cross-sectional community survey

by Yin Mo, Ivan Seah, Pei Shi Priscillia Lye, Xiang Lee Jamie Kee, Kien Yee Michael Wong, Kwan Ki Karrie Ko, Rick Twee Hee Ong, Paul A. Tambyah, Alex R. Cook
Published 2020

Genomic evidence supporting the clonal expansion of extensively drug resistant tuberculosis bacteria belonging to a rare Proto-Beijing genotype

by Prapaporn Srilohasin, Therdsak Prammananan, Kiatichai Faksri, Jody Phelan, Prapat Suriyaphol, Phalin Kamolwat, Saijai Smithtikarn, Areeya Disratthakit, Sanjib Regmi, Manoon Leechawengwongs, Rick Twee-Hee Ong, Yik-Ying Teo, Sissades Thongsima, Taane Clark, Angkana Chaiprasert
Published 2021

Genomic Characterisation of Carbapenem Non-susceptible Pseudomonas aeruginosa in Singapore

by Jocelyn Qi-Min Teo, Cheng Yee Tang, Jie Chong Lim, Shannon Jing-Yi Lee, Si Hui Tan, Tse-Hsien Koh, James Heng-Chiak Sim, Thuan-Tong Tan, Andrea Kwa, Rick Twee-Hee Ong
Published 2022

Comparative whole-genome sequence analysis of Mycobacterium tuberculosis isolated from tuberculous meningitis and pulmonary tuberculosis patients

by Kiatichai Faksri, Eryu Xia, Rick Twee Hee Ong, Jun Hao Tan, Ditthawat Nonghanphithak, Nampueng Makhao, Nongnard Thamnongdee, Arirat Thanormchat, Arisa Phurattanakornkul, Somcharn Rattanarangsee, Chate Ratanajaraya, Prapat Suriyaphol, Therdsak Prammananan, Yik Ying Teo, Angkana Chaiprasert
Published 2019

Genomic evidence supporting the clonal expansion of extensively drug-resistant tuberculosis bacteria belonging to a rare proto-Beijing genotype

by Prapaporn Srilohasin, Therdsak Prammananan, Kiatichai Faksri, Jody E. Phelan, Prapat Suriyaphol, Phalin Kamolwat, Saijai Smithtikarn, Areeya Disratthakit, Sanjib Mani Regmi, Manoon Leechawengwongs, Rick Twee-Hee Ong, Yik Ying Teo, Sissades Tongsima, Taane G. Clark, Angkana Chaiprasert
Published 2020

Genetic relatedness of indigenous ethnic groups in northern Borneo to neighboring populations from Southeast Asia, as inferred from genome-wide SNP data

by Yew, Chee Wei, Mohd Zahirul Hoque, Jacqueline Pugh-Kitingan, Alexander Minsong, Voo, Christopher Lok Yung, Julian Ransangan, Lau, Sophia Tiek Ying, Xu Wang, Woei Yuh Saw, Rick Twee-Hee Ong, Teo, Yik-Ying, Shuhua Xu, Hoh, Boon-Peng, Maude E. Phipps, Vijay Kumar Subbiah
Published 2018

Genomic structure of the native inhabitants of Peninsular Malaysia and North Borneo suggests complex human population history in Southeast Asia

by Yew, Chee Wei, Dongsheng Lu, Lian Deng, Lai-Ping Wong, Rick Twee-Hee Ong, Yan Lu, Xiaoji Wang, Yunus Yushimah, Farhang Aghakhanian, Mokhtar Siti Shuhada, Mohammad Zahirul Hoque, Christopher Lok-Yung, Thuhairah Abdul Rahman, Jong Bhak, Maude E. Phipps, Shuhua Xu, Yik-Ying Teo, Subbiah Vijay Kumar, Boon-Peng Hoh
Published 2018