Bioinformatics tools and databases for whole genome sequence analysis of Mycobacterium tuberculosis

by Kiatichai Faksri, Jun Hao Tan, Angkana Chaiprasert, Yik Ying Teo, Rick Twee Hee Ong
Published 2018

Assessing the impact of novelty and conformity on hesitancy towards COVID-19 vaccines using mRNA technology

by Ching Leong, Lawrence Jin, Dayoung Kim, Jeongbin Kim, Yik Ying Teo, Teck-Hua Ho
Published 2022

Comparisons of whole-genome sequencing and phenotypic drug susceptibility testing for Mycobacterium tuberculosis causing MDR-TB and XDR-TB in Thailand

by Kiatichai Faksri, Orawee Kaewprasert, Rick Twee Hee Ong, Prapat Suriyaphol, Therdsak Prammananan, Yik Ying Teo, Prapaporn Srilohasin, Angkana Chaiprasert
Published 2020

Whole-genome analysis of drug-resistant Mycobacterium tuberculosis reveals novel mutations associated with fluoroquinolone resistance

by Pratchakan Chaiyachat, Angkana Chaiprasert, Ditthawat Nonghanphithak, Saijai Smithtikarn, Phalin Kamolwat, Petchawan Pungrassami, Wipa Reechaipichitkul, Rick Twee Hee Ong, Yik Ying Teo, Kiatichai Faksri
Published 2022

Whole-genome sequencing analysis of serially isolated multi-drug and extensively drug resistant Mycobacterium tuberculosis from Thai patients

by Kiatichai Faksri, Jun Hao Tan, Areeya Disratthakit, Eryu Xia, Therdsak Prammananan, Prapat Suriyaphol, Chiea Chuen Khor, Yik Ying Teo, Rick Twee Hee Ong, Angkana Chaiprasert
Published 2018

Viral quasispecies inference from 454 pyrosequencing

by Wan Ting Poh, Eryu Xia, Kwanrutai Chin-inmanu, Lai Ping Wong, Anthony Y. Cheng, Prida Malasit, Prapat Suriyaphol, Yik Ying Teo, Rick Twee Hee Ong
Published 2018

Genetic signatures of Mycobacterium tuberculosis Nonthaburi genotype revealed by whole genome analysis of isolates from tuberculous meningitis patients in Thailand

by Olabisi Oluwabukola Coker, Angkana Chaiprasert, Chumpol Ngamphiw, Sissades Tongsima, Sanjib Mani Regmi, Taane G. Clark, Rick Twee Hee Ong, Yik Ying Teo, Therdsak Prammananan, Prasit Palittapongarnpim
Published 2018

Shared Signature of Recent Positive Selection on the TSBP1–BTNL2–HLA-DRA Genes in Five Native Populations from North Borneo

by Boon-Peng Hoh, Xiaoxi Zhang, Lian Deng, Kai Yuan, Yew, Chee Wei, Woei-Yuh Saw, Mohammad Zahirul Hoque, Farhang Aghakhanian, Maude E. Phipps, Yik-Ying Teo, Vijay Kumar Subbiah, Shuhua Xu
Published 2020

Genomic evidence supporting the clonal expansion of extensively drug resistant tuberculosis bacteria belonging to a rare Proto-Beijing genotype

by Prapaporn Srilohasin, Therdsak Prammananan, Kiatichai Faksri, Jody Phelan, Prapat Suriyaphol, Phalin Kamolwat, Saijai Smithtikarn, Areeya Disratthakit, Sanjib Regmi, Manoon Leechawengwongs, Rick Twee-Hee Ong, Yik-Ying Teo, Sissades Thongsima, Taane Clark, Angkana Chaiprasert
Published 2021

Comparative whole-genome sequence analysis of Mycobacterium tuberculosis isolated from tuberculous meningitis and pulmonary tuberculosis patients

by Kiatichai Faksri, Eryu Xia, Rick Twee Hee Ong, Jun Hao Tan, Ditthawat Nonghanphithak, Nampueng Makhao, Nongnard Thamnongdee, Arirat Thanormchat, Arisa Phurattanakornkul, Somcharn Rattanarangsee, Chate Ratanajaraya, Prapat Suriyaphol, Therdsak Prammananan, Yik Ying Teo, Angkana Chaiprasert
Published 2019

Genomic evidence supporting the clonal expansion of extensively drug-resistant tuberculosis bacteria belonging to a rare proto-Beijing genotype

by Prapaporn Srilohasin, Therdsak Prammananan, Kiatichai Faksri, Jody E. Phelan, Prapat Suriyaphol, Phalin Kamolwat, Saijai Smithtikarn, Areeya Disratthakit, Sanjib Mani Regmi, Manoon Leechawengwongs, Rick Twee-Hee Ong, Yik Ying Teo, Sissades Tongsima, Taane G. Clark, Angkana Chaiprasert
Published 2020

Exploring Factors Underlying Ethnic Difference in Age-related Macular Degeneration Prevalence

by Mark Jones, Clare Whitton, Ava Grace Tan, Elizabeth Holliday, Christopher Oldmeadow, Victoria Flood, Xueling Sim, Jin-Fang Chai, Haslina Hamzah, Ronald Klein, Yik-Ying Teo, Paul Mitchell, Tien-Yin Wong, E Shyong Tai, Rob van Dam, John Attia, Jie Jin Wang
Published 2020

Genomic structure of the native inhabitants of Peninsular Malaysia and North Borneo suggests complex human population history in Southeast Asia

by Yew, Chee Wei, Dongsheng Lu, Lian Deng, Lai-Ping Wong, Rick Twee-Hee Ong, Yan Lu, Xiaoji Wang, Yunus Yushimah, Farhang Aghakhanian, Mokhtar Siti Shuhada, Mohammad Zahirul Hoque, Christopher Lok-Yung, Thuhairah Abdul Rahman, Jong Bhak, Maude E. Phipps, Shuhua Xu, Yik-Ying Teo, Subbiah Vijay Kumar, Boon-Peng Hoh
Published 2018

Genomic structure of the native inhabitants of Peninsular Malaysia and North Borneo suggests complex human population history in Southeast Asia.

by Wei, Yew Chee., Dong sheng Lu, Ping, Lai Wong, Lian Deng, Hee Ong, Rick Twee, Yushimah Yunus, Farhang Aghakhanian, Siti Shuhada Mokhtar, Zahirul Hoque, Christopher Lok-Yung Voo, Thuhairah Abdul Rahman, Fadzilah Mohd Nor, Syahrul Azlin Shaar, Jong Bhak, Phipps, Maude E., Shuhua Xu, Yik-Ying Teo, Kumar, Vijay S ., Peng Hoh, Boon.
Published 2018

Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1

by Chiea Chuen Khor, Tran Nguyen Bich Chau, Junxiong Pang, Sonia Davila, Hoang Truong Long, Rick T.H. Ong, Sarah J. Dunstan, Bridget Wills, Jeremy Farrar, Ta Van Tram, Tran Thi Gan, Nguyen Thi Nguyet Binh, Le Trung Tri, Le Bich Lien, Nguyen Minh Tuan, Nguyen Thi Hong Tham, Mai Ngoc Lanh, Nguyen Minh Nguyet, Nguyen Trong Hieu, Nguyen Van N Vinh Chau, Tran Thi Thuy, Dennis E.K. Tan, Anavaj Sakuntabhai, Yik Ying Teo, Martin L. Hibberd, Cameron P. Simmons
Published 2018

Characterising private and shared signatures of positive selection in 37 Asian populations

by Xuanyao Liu, Dongsheng Lu, Woei Yuh Saw, Philip J. Shaw, Pongsakorn Wangkumhang, Chumpol Ngamphiw, Suthat Fucharoen, Worachart Lert-Itthiporn, Kwanrutai Chin-Inmanu, Tran Nguyen Bich Chau, Katie Anders, Anuradhani Kasturiratne, H. Janaka De Silva, Tomohiro Katsuya, Ryosuke Kimura, Toru Nabika, Takayoshi Ohkubo, Yasuharu Tabara, Fumihiko Takeuchi, Ken Yamamoto, Mitsuhiro Yokota, Dolikun Mamatyusupu, Wenjun Yang, Yeun Jun Chung, Li Jin, Boon Peng Hoh, Ananda R. Wickremasinghe, Ricktwee Hee Ong, Chiea Chuen Khor, Sarah J. Dunstan, Cameron Simmons, Sissades Tongsima, Prapat Suriyaphol, Norihiro Kato, Shuhua Xu, Yik Ying Teo
Published 2018

Genome-wide and fine-resolution association analysis of malaria in West Africa

by Muminatou Jallow, Yik Ying Teo, Kerrin S. Small, Kirk A. Rockett, Panos Deloukas, Taane G. Clark, Katja Kivinen, Kalifa A. Bojang, David J. Conway, Margaret Pinder, Giorgio Sirugo, Fatou Sisay-Joof, Stanley Usen, Sarah Auburn, Suzannah J. Bumpstead, Susana Campino, Alison Coffey, Andrew Dunham, Andrew E. Fry, Angela Green, Rhian Gwilliam, Sarah E. Hunt, Michael Inouye, Anna E. Jeffreys, Alieu Mendy, Aarno Palotie, Simon Potter, Jiannis Ragoussis, Jane Rogers, Kate Rowlands, Elilan Somaskantharajah, Pamela Whittaker, Claire Widden, Peter Donnelly, Bryan Howie, Jonathan Marchini, Andrew Morris, Miguel Sanjoaquin, Eric Akum Achidi, Tsiri Agbenyega, Angela Allen, Olukemi Amodu, Patrick Corran, Abdoulaye Djimde, Amagana Dolo, Ogobara K. Doumbo, Chris Drakeley, Sarah Dunstan, Jennifer Evans, Jeremy Farrar, Deepika Fernando, Tran Tinh Hien, Rolf D. Horstmann, Muntaser Ibrahim, Nadira Karunaweera, Gilbert Kokwaro, Kwadwo A. Koram, Martha Lemnge, Julie Makani, Kevin Marsh, Pascal Michon, David Modiano, Malcolm E. Molyneux, Ivo Mueller, Michael Parker, Norbert Peshu, Christopher V. Plowe, Odile Puijalon, John Reeder, Hugh Reyburn, Eleanor M. Riley, Anavaj Sakuntabhai, Pratap Singhasivanon, Sodiomon Sirima, Adama Tall, Terrie E. Taylor, Mahamadou Thera, Marita Troye-Blomberg, Thomas N. Williams, Michael Wilson, Dominic P. Kwiatkowski
Published 2018

Author Correction: Evaluating drug targets through human loss-of-function genetic variation (Nature, (2020), 581, 7809, (459-464), 10.1038/s41586-020-2267-z)

by Minikel, Eric Vallabh, Karczewski, Konrad J., Martin, Hilary C., Cummings, Beryl B., Whiffin, Nicola, Rhodes, Daniel, Alföldi, J., Trembath, Richard C., van Heel, David A., Daly, Mark J., Alföldi, J., Armean, I.M., Banks, E., Bergelson, L., Cibulskis, K., Collins, R.L., Connolly, K.M., Covarrubias, M., Cummings, Beryl B., Daly, Mark J., Donnelly, S., Farjoun, Y., Ferriera, S., Francioli, L., Gabriel, S., Gauthier, L.D., Gentry, J., Gupta, N., Jeandet, T., Kaplan, D., Karczewski, Konrad J., Laricchia, K.M., Llanwarne, C., Minikel, Eric Vallabh, Munshi, R., Neale, B.M., Novod, S., O’Donnell-Luria, A.H., Petrillo, N., Poterba, T., Roazen, D., Ruano-Rubio, V., Saltzman, A., Samocha, K.E., Schleicher, M., Seed, C., Solomonson, M., Soto, J., Tiao, G., Tibbetts, K., Tolonen, C., Vittal, C., Wade, G., Wang, A., Wang, Q., Ware, J.S., Watts, N.A., Weisburd, B., Whiffin, Nicola, Aguilar Salinas, C.A., Ahmad, T., Albert, C.M., Ardissino, D., Atzmon, G., Barnard, J., Beaugerie, L., Benjamin, E.J., Boehnke, M., Bonnycastle, L.L., Bottinger, E.P., Bowden, D.W., Bown, M.J., Chambers, J.C., Chan, J.C., Chasman, D., Cho, J., Chung, M.K., Cohen, B., Correa, A., Dabelea, D., Daly, Mark J., Darbar, D., Duggirala, R., Dupuis, J., Ellinor, P.T., Elosua, R., Erdmann, J., Esko, T., Färkkilä, M., Florez, J., Franke, A., Getz, G., Glaser, B., Glatt, S.J., Goldstein, D., Gonzalez, C., Groop, L., Haiman, C., Hanis, C., Harms, M., Hiltunen, M., Holi, M.M., Hultman, C.M., Kallela, M., Kaprio, J., Kathiresan, S., Kim, B.-J., Kim, Y.J., Kirov, G., Kooner, J., Koskinen, S., Krumholz, H.M., Kugathasan, S., Kwak, S.H., Laakso, M., Lehtimäki, T., Loos, R.J.F., Lubitz, S.A., Ma, R.C.W., MacArthur, Daniel G., Marrugat, J., Mattila, K.M., McCarroll, S., McCarthy, M.I., McGovern, D., McPherson, R., Meigs, J.B., Melander, O., Metspalu, A., Neale, B.M., Nilsson, P.M., O’Donovan, M.C., Ongur, D., Orozco, L., Owen, M.J., Palmer, C.N.A., Palotie, A., Park, K.S., Pato, C., Pulver, A.E., Rahman, N., Remes, A.M., Rioux, J.D., Ripatti, S., Roden, D.M., Saleheen, D., Salomaa, V., Samani, N.J., Scharf, J., Schunkert, H., Shoemaker, M.B., Sklar, P., Soininen, H., Sokol, H., Spector, T., Sullivan, P.F., Suvisaari, J., Tai E Shyong, Yik Ying Teo, Tiinamaija, T., Tsuang, M., Dan Turner, T., Tusie-Luna, T., Vartiainen, E., Vawter, M.P., Watkins, H., Weersma, R.K., Wessman, M., Wilson, J.G., Xavier, R.J., Schreiber, Stuart L., MacArthur, Daniel G., Genome Aggregation Database Production Team., Genome Aggregation Database Consortium.
Published 2022