An in-solution hybridisation method for the isolation of pathogen DNA from human DNA-rich clinical samples for analysis by NGS

by Miriam Smith, Susana Campino, Yong Gu, Taane G. Clark, Thomas D. Otto, Gareth Maslen, Magnus Manske, Mallika Imwong, Arjen M. Dondorp, Dominic P. Kwiatkowski, Michael A. Quail, Harold Swerdlow
Published 2018

Selective whole genome amplification of Plasmodium malariae DNA from clinical samples reveals insights into population structure

by Amy Ibrahim, Ernest Diez Benavente, Debbie Nolder, Stephane Proux, Matthew Higgins, Julian Muwanguzi, Paula Josefina Gomez Gonzalez, Hans Peter Fuehrer, Cally Roper, Francois Nosten, Colin Sutherland, Taane G. Clark, Susana Campino
Published 2020

A molecular barcode to inform the geographical origin and transmission dynamics of Plasmodium vivax malaria

by Ernest Diez Benavente, Monica Campos, Jody Phelan, Debbie Nolder, Jamille G. Dombrowski, Claudio R.F. Marinho, Kanlaya Sriprawat, Aimee R. Taylor, James Watson, Cally Roper, Francois Nosten, Colin J. Sutherland, Susana Campino, Taane G. Clark
Published 2020

Characterization of within-host plasmodium falciparum diversity using next-generation sequence data

by Sarah Auburn, Susana Campino, Olivo Miotto, Abdoulaye A. Djimde, Issaka Zongo, Magnus Manske, Gareth Maslen, Valentina Mangano, Daniel Alcock, Bronwyn MacInnis, Kirk A. Rockett, Taane G. Clark, Ogobara K. Doumbo, Jean Bosco Ouédraogo, Dominic P. Kwiatkowski
Published 2018

Distinctive genetic structure and selection patterns in Plasmodium vivax from South Asia and East Africa

by Ernest Diez Benavente, Emilia Manko, Jody Phelan, Monica Campos, Debbie Nolder, Diana Fernandez, Gabriel Velez-Tobon, Alberto Tobón Castaño, Jamille G. Dombrowski, Claudio R.F. Marinho, Anna Caroline C. Aguiar, Dhelio Batista Pereira, Kanlaya Sriprawat, Francois Nosten, Robert Moon, Colin J. Sutherland, Susana Campino, Taane G. Clark
Published 2022

Genomic analysis of a pre-elimination Malaysian Plasmodium vivax population reveals selective pressures and changing transmission dynamics

by Sarah Auburn, Ernest D. Benavente, Olivo Miotto, Richard D. Pearson, Roberto Amato, Matthew J. Grigg, Bridget E. Barber, Timothy William, Irene Handayuni, Jutta Marfurt, Hidayat Trimarsanto, Rintis Noviyanti, Kanlaya Sriprawat, Francois Nosten, Susana Campino, Taane G. Clark, Nicholas M. Anstey, Dominic P. Kwiatkowski, Ric N. Price
Published 2019

Effective Preparation of Plasmodium vivax Field Isolates for High-Throughput Whole Genome Sequencing

by Sarah Auburn, Jutta Marfurt, Gareth Maslen, Susana Campino, Valentin Ruano Rubio, Magnus Manske, Barbara MacHunter, Enny Kenangalem, Rintis Noviyanti, Leily Trianty, Boni Sebayang, Grennady Wirjanata, Kanlaya Sriprawat, Daniel Alcock, Bronwyn MacInnis, Olivo Miotto, Taane G. Clark, Bruce Russell, Nicholas M. Anstey, François Nosten, Dominic P. Kwiatkowski, Ric N. Price
Published 2018

A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains

by Mark D. Preston, Susana Campino, Samuel A. Assefa, Diego F. Echeverry, Harold Ocholla, Alfred Amambua-Ngwa, Lindsay B. Stewart, David J. Conway, Steffen Borrmann, Pascal Michon, Issaka Zongo, Jean Bosco Ouédraogo, Abdoulaye A. Djimde, Ogobara K. Doumbo, Francois Nosten, Arnab Pain, Teun Bousema, Chris J. Drakeley, Rick M. Fairhurst, Colin J. Sutherland, Cally Roper, Taane G. Clark
Published 2018

Whole-genome scans provide evidence of adaptive evolution in malawian Plasmodium falciparum isolates

by Harold Ocholla, Mark D. Preston, Mwapatsa Mipando, Anja T.R. Jensen, Susana Campino, Bronwyn Macinnis, Daniel Alcock, Anja Terlouw, Issaka Zongo, Jean Bosco Oudraogo, Abdoulaye A. Djimde, Samuel Assefa, Ogobara K. Doumbo, Steffen Borrmann, Alexis Nzila, Kevin Marsh, Rick M. Fairhurst, Francois Nosten, Tim J.C. Anderson, Dominic P. Kwiatkowski, Alister Craig, Taane G. Clark, Jacqui Montgomery
Published 2018

Population genetic analysis of plasmodium falciparum parasites using a customized illumina goldengate genotyping assay

by Susana Campino, Sarah Auburn, Katja Kivinen, Issaka Zongo, Jean Bosco Ouedraogo, Valentina Mangano, Abdoulaye Djimde, Ogobara K. Doumbo, Steven M. Kiara, Alexis Nzila, Steffen Borrmann, Kevin Marsh, Pascal Michon, Ivo Mueller, Peter Siba, Hongying Jiang, Xin Zhuan Su, Chanaki Amaratunga, Duong Socheat, Rick M. Fairhurst, Mallika Imwong, Timothy Anderson, François Nosten, Nicholas J. White, Rhian Gwilliam, Panos Deloukas, Bronwyn MacInnis, Christopher I. Newbold, Kirk Rockett, Taane G. Clark, Dominic P. Kwiatkowski
Published 2018

Genomic analysis of local variation and recent evolution in Plasmodium vivax

by Richard D. Pearson, Roberto Amato, Sarah Auburn, Olivo Miotto, Jacob Almagro-Garcia, Chanaki Amaratunga, Seila Suon, Sivanna Mao, Rintis Noviyanti, Hidayat Trimarsanto, Jutta Marfurt, Nicholas M. Anstey, Timothy William, MacIej F. Boni, Christiane Dolecek, Hien Tinh Tran, Nicholas J. White, Pascal Michon, Peter Siba, Livingstone Tavul, Gabrielle Harrison, Alyssa Barry, Ivo Mueller, Marcelo U. Ferreira, Nadira Karunaweera, Milijaona Randrianarivelojosia, Qi Gao, Christina Hubbart, Lee Hart, Ben Jeffery, Eleanor Drury, Daniel Mead, Mihir Kekre, Susana Campino, Magnus Manske, Victoria J. Cornelius, Bronwyn MacInnis, Kirk A. Rockett, Alistair Miles, Julian C. Rayner, Rick M. Fairhurst, Francois Nosten, Ric N. Price, Dominic P. Kwiatkowski
Published 2018

Genetic loci associated with delayed clearance of plasmodium falciparum following artemisinin

by Shannon Takala-Harrison, Taane G. Clark, Christopher G. Jacob, Michael P. Cummings, Olivo Miotto, Arjen M. Dondorpe, Mark M. Fukuda, Francois Nosten, Harald Noedl, Mallika Imwong, Delia Bethell, Youry Se, Chanthap Lon, Stuart D. Tyner, David L. Saunders, Duong Socheat, Frederic Ariey, Aung Pyae Phyo, Peter Starzengruber, Hans Peter Fuehrer, Paul Swoboda, Kasia Stepniewska, Jennifer Flegg, Cesar Arze, Gustavo C. Cerqueira, Joana C. Silva, Stacy M. Ricklefs, Stephen F. Porcella, Robert M. Stephens, Matthew Adams, Leo J. Kenefic, Susana Campino, Sarah Auburn, Bronwyn MacInnis, Dominic P. Kwiatkowskid, Xin Zhuan Su, Nicholas J. White, Pascal Ringwald, Christopher V. Plowe
Published 2018

Genetic architecture of artemisinin-resistant Plasmodium falciparum

by Olivo Miotto, Roberto Amato, Elizabeth A. Ashley, Bronwyn Macinnis, Jacob Almagro-Garcia, Chanaki Amaratunga, Pharath Lim, Daniel Mead, Samuel O. Oyola, Mehul Dhorda, Mallika Imwong, Charles Woodrow, Magnus Manske, Jim Stalker, Eleanor Drury, Susana Campino, Lucas Amenga-Etego, Thuy Nhien Nguyen Thanh, Hien Tinh Tran, Pascal Ringwald, Delia Bethell, Francois Nosten, Aung Pyae Phyo, Sasithon Pukrittayakamee, Kesinee Chotivanich, Char Meng Chuor, Chea Nguon, Seila Suon, Sokunthea Sreng, Paul N. Newton, Mayfong Mayxay, Maniphone Khanthavong, Bouasy Hongvanthong, Ye Htut, Kay Thwe Han, Myat Phone Kyaw, Md Abul Faiz, Caterina I. Fanello, Marie Onyamboko, Olugbenga A. Mokuolu, Christopher G. Jacob, Shannon Takala-Harrison, Christopher V. Plowe, Nicholas P. Day, Arjen M. Dondorp, Chris C.A. Spencer, Gilean Mcvean, Rick M. Fairhurst, Nicholas J. White, Dominic P. Kwiatkowski
Published 2018

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

by Magnus Manske, Olivo Miotto, Susana Campino, Sarah Auburn, Jacob Almagro-Garcia, Gareth Maslen, Jack O'Brien, Abdoulaye Djimde, Ogobara Doumbo, Issaka Zongo, Jean Bosco Ouedraogo, Pascal Michon, Ivo Mueller, Peter Siba, Alexis Nzila, Steffen Borrmann, Steven M. Kiara, Kevin Marsh, Hongying Jiang, Xin Zhuan Su, Chanaki Amaratunga, Rick Fairhurst, Duong Socheat, Francois Nosten, Mallika Imwong, Nicholas J. White, Mandy Sanders, Elisa Anastasi, Dan Alcock, Eleanor Drury, Samuel Oyola, Michael A. Quail, Daniel J. Turner, Valentin Ruano-Rubio, Dushyanth Jyothi, Lucas Amenga-Etego, Christina Hubbart, Anna Jeffreys, Kate Rowlands, Colin Sutherland, Cally Roper, Valentina Mangano, David Modiano, John C. Tan, Michael T. Ferdig, Alfred Amambua-Ngwa, David J. Conway, Shannon Takala-Harrison, Christopher V. Plowe, Julian C. Rayner, Kirk A. Rockett, Taane G. Clark, Chris I. Newbold, Matthew Berriman, Bronwyn MacInnis, Dominic P. Kwiatkowski
Published 2018

Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia

by Olivo Miotto, Jacob Almagro-Garcia, Magnus Manske, Bronwyn MacInnis, Susana Campino, Kirk A. Rockett, Chanaki Amaratunga, Pharath Lim, Seila Suon, Sokunthea Sreng, Jennifer M. Anderson, Socheat Duong, Chea Nguon, Char Meng Chuor, David Saunders, Youry Se, Chantap Lon, Mark M. Fukuda, Lucas Amenga-Etego, Abraham V.O. Hodgson, Victor Asoala, Mallika Imwong, Shannon Takala-Harrison, François Nosten, Xin Zhuan Su, Pascal Ringwald, Frédéric Ariey, Christiane Dolecek, Tran Tinh Hien, Maciej F. Boni, Cao Quang Thai, Alfred Amambua-Ngwa, David J. Conway, Abdoulaye A. Djimdé, Ogobara K. Doumbo, Issaka Zongo, Jean Bosco Ouedraogo, Daniel Alcock, Eleanor Drury, Sarah Auburn, Oliver Koch, Mandy Sanders, Christina Hubbart, Gareth Maslen, Valentin Ruano-Rubio, Dushyanth Jyothi, Alistair Miles, John O'Brien, Chris Gamble, Samuel O. Oyola, Julian C. Rayner, Chris I. Newbold, Matthew Berriman, Chris C.A. Spencer, Gilean McVean, Nicholas P. Day, Nicholas J. White, Delia Bethell, Arjen M. Dondorp, Christopher V. Plowe, Rick M. Fairhurst, Dominic P. Kwiatkowski
Published 2018

Genomic epidemiology of artemisinin resistant malaria

by Roberto Amato, Olivo Miotto, Charles J. Woodrow, Jacob Almagro-Garcia, Ipsita Sinha, Susana Campino, Daniel Mead, Eleanor Drury, Mihir Kekre, Mandy Sanders, Alfred Amambua-Ngwa, Chanaki Amaratunga, Lucas Amenga-Etego, Voahangy Andrianaranjaka, Tobias Apinjoh, Elizabeth Ashley, Sarah Auburn, Gordon A. Awandare, Vito Baraka, Alyssa Barry, Maciej F. Boni, Steffen Borrmann, Teun Bousema, Oralee Branch, Peter C. Bull, Kesinee Chotivanich, David J. Conway, Alister Craig, Nicholas P. Day, Abdoulaye Djimdé, Christiane Dolecek, Arjen M. Dondorp, Chris Drakeley, Patrick Duffy, Diego F. Echeverry, Thomas G. Egwang, Rick M. Fairhurst, Abul Faiz, Caterina I. Fanello, Tran Tinh Hien, Abraham Hodgson, Mallika Imwong, Deus Ishengoma, Pharath Lim, Chanthap Lon, Jutta Marfurt, Kevin Marsh, Mayfong Mayxay, Pascal Michon, Victor Mobegi, Olugbenga A. Mokuolu, Jacqui Montgomery, Ivo Mueller, Myat Phone Kyaw, Paul N. Newton, Francois Nosten, Rintis Noviyanti, Alexis Nzila, Harold Ocholla, Abraham Oduro, Marie Onyamboko, Jean Bosco Ouedraogo, Aung Pyae P. Phyo, Christopher Plowe, Ric N. Price, Sasithon Pukrittayakamee, Milijaona Randrianarivelojosia, Pascal Ringwald, Lastenia Ruiz, David Saunders, Alex Shayo, Peter Siba, Shannon Takala-Harrison, Thuy Nhien N. Thanh, Vandana Thathy, Federica Verra, Jason Wendler
Published 2018

A global network for investigating the genomic epidemiology of malaria

by Eric Akum Achidi, Tsiri Agbenyega, Stephen Allen, Olukemi Amodu, Kalifa Bojang, David Conway, Patrick Corran, Panos Deloukas, Abdoulaye Djimde, Amagana Dolo, Ogobara Doumbo, Chris Drakeley, Patrick Duffy, Sarah Dunstan, Jennifer Evans, Jeremy Farrar, Deepika Fernando, Tran Tinh Hien, Rolf Horstmann, Muntaser Ibrahim, Nadira Karunaweera, Gilbert Kokwaro, Kojo Koram, Dominic Kwiatkowski, Martha Lemnge, Julie Makani, Kevin Marsh, Pascal Michon, David Modiano, Malcolm E. Molyneux, Ivo Mueller, Theonest Mutabingwa, Michael Parker, Norbert Peshu, Chris Plowe, Odile Puijalon, Jiannis Ragoussis, John Reeder, Hugh Reyburn, Eleanor Riley, Jane Rogers, Anavaj Sakuntabhai, Pratap Singhasivanon, Sodiomon Sirima, Giorgio Sirugo, Adama Tall, Terrie Taylor, Mahamadou Thera, Marita Troye-Blomberg, Tom Williams, Michael Wilson, Lucas Amenga-Etego, Tobias O. Apinjoh, Edith Bougouma, Rajika Dewasurendra, Mahamadou Diakite, Anthony Enimil, Ayman Hussein, Deus Ishengoma, Muminatou Jallow, Enmoore Lin, Alioune Ly, Valentina D. Mangano, Alphaxard Manjurano, Laurens Manning, Carolyne M. Ndila, Vysaul Nyirongo, Tom Oluoch, Nguyen T.N. Quyen, Prapat Suriyaphol, Ousman Toure, Kirk A. Rockett, Aaron Vanderwal, Taane Clark, Rebecca Wrigley, Daniel Alcock, Sarah Auburn, David Barnwell, Susan Bull, Susana Campino, Jantina DeVries, Abier Elzein, Julie Evans, Kathryn Fitzpatrick
Published 2018

Genome-wide and fine-resolution association analysis of malaria in West Africa

by Muminatou Jallow, Yik Ying Teo, Kerrin S. Small, Kirk A. Rockett, Panos Deloukas, Taane G. Clark, Katja Kivinen, Kalifa A. Bojang, David J. Conway, Margaret Pinder, Giorgio Sirugo, Fatou Sisay-Joof, Stanley Usen, Sarah Auburn, Suzannah J. Bumpstead, Susana Campino, Alison Coffey, Andrew Dunham, Andrew E. Fry, Angela Green, Rhian Gwilliam, Sarah E. Hunt, Michael Inouye, Anna E. Jeffreys, Alieu Mendy, Aarno Palotie, Simon Potter, Jiannis Ragoussis, Jane Rogers, Kate Rowlands, Elilan Somaskantharajah, Pamela Whittaker, Claire Widden, Peter Donnelly, Bryan Howie, Jonathan Marchini, Andrew Morris, Miguel Sanjoaquin, Eric Akum Achidi, Tsiri Agbenyega, Angela Allen, Olukemi Amodu, Patrick Corran, Abdoulaye Djimde, Amagana Dolo, Ogobara K. Doumbo, Chris Drakeley, Sarah Dunstan, Jennifer Evans, Jeremy Farrar, Deepika Fernando, Tran Tinh Hien, Rolf D. Horstmann, Muntaser Ibrahim, Nadira Karunaweera, Gilbert Kokwaro, Kwadwo A. Koram, Martha Lemnge, Julie Makani, Kevin Marsh, Pascal Michon, David Modiano, Malcolm E. Molyneux, Ivo Mueller, Michael Parker, Norbert Peshu, Christopher V. Plowe, Odile Puijalon, John Reeder, Hugh Reyburn, Eleanor M. Riley, Anavaj Sakuntabhai, Pratap Singhasivanon, Sodiomon Sirima, Adama Tall, Terrie E. Taylor, Mahamadou Thera, Marita Troye-Blomberg, Thomas N. Williams, Michael Wilson, Dominic P. Kwiatkowski
Published 2018