Characterization of within-host plasmodium falciparum diversity using next-generation sequence data

by Sarah Auburn, Susana Campino, Olivo Miotto, Abdoulaye A. Djimde, Issaka Zongo, Magnus Manske, Gareth Maslen, Valentina Mangano, Daniel Alcock, Bronwyn MacInnis, Kirk A. Rockett, Taane G. Clark, Ogobara K. Doumbo, Jean Bosco Ouédraogo, Dominic P. Kwiatkowski
Published 2018

A genome wide association study of Plasmodium falciparum susceptibility to 22 antimalarial drugs in Kenya

by Jason P. Wendler, John Okombo, Roberto Amato, Olivo Miotto, Steven M. Kiara, Leah Mwai, Lewa Pole, John O'Brien, Magnus Manske, Dan Alcock, Eleanor Drury, Mandy Sanders, Samuel O. Oyola, Cinzia Malangone, Dushyanth Jyothi, Alistair Miles, Kirk A. Rockett, Bronwyn L. MacInnis, Kevin Marsh, Philip Bejon, Alexis Nzila, Dominic P. Kwiatkowski
Published 2018

Genomic analysis of local variation and recent evolution in Plasmodium vivax

by Richard D. Pearson, Roberto Amato, Sarah Auburn, Olivo Miotto, Jacob Almagro-Garcia, Chanaki Amaratunga, Seila Suon, Sivanna Mao, Rintis Noviyanti, Hidayat Trimarsanto, Jutta Marfurt, Nicholas M. Anstey, Timothy William, MacIej F. Boni, Christiane Dolecek, Hien Tinh Tran, Nicholas J. White, Pascal Michon, Peter Siba, Livingstone Tavul, Gabrielle Harrison, Alyssa Barry, Ivo Mueller, Marcelo U. Ferreira, Nadira Karunaweera, Milijaona Randrianarivelojosia, Qi Gao, Christina Hubbart, Lee Hart, Ben Jeffery, Eleanor Drury, Daniel Mead, Mihir Kekre, Susana Campino, Magnus Manske, Victoria J. Cornelius, Bronwyn MacInnis, Kirk A. Rockett, Alistair Miles, Julian C. Rayner, Rick M. Fairhurst, Francois Nosten, Ric N. Price, Dominic P. Kwiatkowski
Published 2018

Admixture into and within sub-Saharan Africa

by George B.J. Busby, Gavin Band, Quang Si Le, Muminatou Jallow, Edith Bougama, Valentina D. Mangano, Lucas N. Amenga-Etego, Anthony Enimil, Tobias Apinjoh, Carolyne M. Ndila, Alphaxard Manjurano, Vysaul Nyirongo, Ogobara Doumba, Kirk A. Rockett, Dominic P. Kwiatkowski, Chris C.A. Spencer, Aaron Vanderwal, Abier Elzein, Aceme Nyika, Alieu Mendy, Alistair Miles, Andrea Diss, Angeliki Kerasidou, Angie Green, Anna E. Jeffreys, Bronwyn MacInnis, Catherine Hughes, Catherine Moyes, Christina Hubbart, Cinzia Malangone, Claire Potter, Daniel Mead, David Barnwell, Dushyanth Jyothi, Eleanor Drury, Elilan Somaskantharajah, Eliza Hilton, Ellen Leffler, Gareth Maslen, George Busby, Geraldine M. Clarke, Ioannis Ragoussis, Jacob Almagro Garcia, Jane Rogers, Jantina deVries, Jennifer Shelton, Jiannis Ragoussis, Jim Stalker, Joanne Rodford, John O'Brien
Published 2018

Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

by Magnus Manske, Olivo Miotto, Susana Campino, Sarah Auburn, Jacob Almagro-Garcia, Gareth Maslen, Jack O'Brien, Abdoulaye Djimde, Ogobara Doumbo, Issaka Zongo, Jean Bosco Ouedraogo, Pascal Michon, Ivo Mueller, Peter Siba, Alexis Nzila, Steffen Borrmann, Steven M. Kiara, Kevin Marsh, Hongying Jiang, Xin Zhuan Su, Chanaki Amaratunga, Rick Fairhurst, Duong Socheat, Francois Nosten, Mallika Imwong, Nicholas J. White, Mandy Sanders, Elisa Anastasi, Dan Alcock, Eleanor Drury, Samuel Oyola, Michael A. Quail, Daniel J. Turner, Valentin Ruano-Rubio, Dushyanth Jyothi, Lucas Amenga-Etego, Christina Hubbart, Anna Jeffreys, Kate Rowlands, Colin Sutherland, Cally Roper, Valentina Mangano, David Modiano, John C. Tan, Michael T. Ferdig, Alfred Amambua-Ngwa, David J. Conway, Shannon Takala-Harrison, Christopher V. Plowe, Julian C. Rayner, Kirk A. Rockett, Taane G. Clark, Chris I. Newbold, Matthew Berriman, Bronwyn MacInnis, Dominic P. Kwiatkowski
Published 2018

Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia

by Olivo Miotto, Jacob Almagro-Garcia, Magnus Manske, Bronwyn MacInnis, Susana Campino, Kirk A. Rockett, Chanaki Amaratunga, Pharath Lim, Seila Suon, Sokunthea Sreng, Jennifer M. Anderson, Socheat Duong, Chea Nguon, Char Meng Chuor, David Saunders, Youry Se, Chantap Lon, Mark M. Fukuda, Lucas Amenga-Etego, Abraham V.O. Hodgson, Victor Asoala, Mallika Imwong, Shannon Takala-Harrison, François Nosten, Xin Zhuan Su, Pascal Ringwald, Frédéric Ariey, Christiane Dolecek, Tran Tinh Hien, Maciej F. Boni, Cao Quang Thai, Alfred Amambua-Ngwa, David J. Conway, Abdoulaye A. Djimdé, Ogobara K. Doumbo, Issaka Zongo, Jean Bosco Ouedraogo, Daniel Alcock, Eleanor Drury, Sarah Auburn, Oliver Koch, Mandy Sanders, Christina Hubbart, Gareth Maslen, Valentin Ruano-Rubio, Dushyanth Jyothi, Alistair Miles, John O'Brien, Chris Gamble, Samuel O. Oyola, Julian C. Rayner, Chris I. Newbold, Matthew Berriman, Chris C.A. Spencer, Gilean McVean, Nicholas P. Day, Nicholas J. White, Delia Bethell, Arjen M. Dondorp, Christopher V. Plowe, Rick M. Fairhurst, Dominic P. Kwiatkowski
Published 2018

A global network for investigating the genomic epidemiology of malaria

by Eric Akum Achidi, Tsiri Agbenyega, Stephen Allen, Olukemi Amodu, Kalifa Bojang, David Conway, Patrick Corran, Panos Deloukas, Abdoulaye Djimde, Amagana Dolo, Ogobara Doumbo, Chris Drakeley, Patrick Duffy, Sarah Dunstan, Jennifer Evans, Jeremy Farrar, Deepika Fernando, Tran Tinh Hien, Rolf Horstmann, Muntaser Ibrahim, Nadira Karunaweera, Gilbert Kokwaro, Kojo Koram, Dominic Kwiatkowski, Martha Lemnge, Julie Makani, Kevin Marsh, Pascal Michon, David Modiano, Malcolm E. Molyneux, Ivo Mueller, Theonest Mutabingwa, Michael Parker, Norbert Peshu, Chris Plowe, Odile Puijalon, Jiannis Ragoussis, John Reeder, Hugh Reyburn, Eleanor Riley, Jane Rogers, Anavaj Sakuntabhai, Pratap Singhasivanon, Sodiomon Sirima, Giorgio Sirugo, Adama Tall, Terrie Taylor, Mahamadou Thera, Marita Troye-Blomberg, Tom Williams, Michael Wilson, Lucas Amenga-Etego, Tobias O. Apinjoh, Edith Bougouma, Rajika Dewasurendra, Mahamadou Diakite, Anthony Enimil, Ayman Hussein, Deus Ishengoma, Muminatou Jallow, Enmoore Lin, Alioune Ly, Valentina D. Mangano, Alphaxard Manjurano, Laurens Manning, Carolyne M. Ndila, Vysaul Nyirongo, Tom Oluoch, Nguyen T.N. Quyen, Prapat Suriyaphol, Ousman Toure, Kirk A. Rockett, Aaron Vanderwal, Taane Clark, Rebecca Wrigley, Daniel Alcock, Sarah Auburn, David Barnwell, Susan Bull, Susana Campino, Jantina DeVries, Abier Elzein, Julie Evans, Kathryn Fitzpatrick
Published 2018

Genome-wide and fine-resolution association analysis of malaria in West Africa

by Muminatou Jallow, Yik Ying Teo, Kerrin S. Small, Kirk A. Rockett, Panos Deloukas, Taane G. Clark, Katja Kivinen, Kalifa A. Bojang, David J. Conway, Margaret Pinder, Giorgio Sirugo, Fatou Sisay-Joof, Stanley Usen, Sarah Auburn, Suzannah J. Bumpstead, Susana Campino, Alison Coffey, Andrew Dunham, Andrew E. Fry, Angela Green, Rhian Gwilliam, Sarah E. Hunt, Michael Inouye, Anna E. Jeffreys, Alieu Mendy, Aarno Palotie, Simon Potter, Jiannis Ragoussis, Jane Rogers, Kate Rowlands, Elilan Somaskantharajah, Pamela Whittaker, Claire Widden, Peter Donnelly, Bryan Howie, Jonathan Marchini, Andrew Morris, Miguel Sanjoaquin, Eric Akum Achidi, Tsiri Agbenyega, Angela Allen, Olukemi Amodu, Patrick Corran, Abdoulaye Djimde, Amagana Dolo, Ogobara K. Doumbo, Chris Drakeley, Sarah Dunstan, Jennifer Evans, Jeremy Farrar, Deepika Fernando, Tran Tinh Hien, Rolf D. Horstmann, Muntaser Ibrahim, Nadira Karunaweera, Gilbert Kokwaro, Kwadwo A. Koram, Martha Lemnge, Julie Makani, Kevin Marsh, Pascal Michon, David Modiano, Malcolm E. Molyneux, Ivo Mueller, Michael Parker, Norbert Peshu, Christopher V. Plowe, Odile Puijalon, John Reeder, Hugh Reyburn, Eleanor M. Riley, Anavaj Sakuntabhai, Pratap Singhasivanon, Sodiomon Sirima, Adama Tall, Terrie E. Taylor, Mahamadou Thera, Marita Troye-Blomberg, Thomas N. Williams, Michael Wilson, Dominic P. Kwiatkowski
Published 2018