Direct folding simulation of a long helix in explicit water
A recently proposed Polarizable Hydrogen Bond (PHB) method has been employed to simulate the folding of a 53 amino acid helix (PDB ID 2KHK) in explicit water. Under PHB simulation, starting from a fully extended structure, the peptide folds into the native state as confirmed by measured time evoluti...
Saved in:
Main Authors: | Zhang, John Z. H., Gao, Ya, Lu, Xiaoliang, Duan, Lili, Zhang, Dawei, Mei, Ye |
---|---|
Other Authors: | School of Physical and Mathematical Sciences |
Format: | Article |
Language: | English |
Published: |
2013
|
Online Access: | https://hdl.handle.net/10356/98147 http://hdl.handle.net/10220/13304 |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Institution: | Nanyang Technological University |
Language: | English |
Similar Items
-
Ab initio folding of extended α-helix : a theoretical study about the role of electrostatic polarization in the folding of helical structures
by: Lazim, Raudah, et al.
Published: (2013) -
Replica exchange molecular dynamics simulation of structure variation from α/4β-fold to 3α-fold protein
by: Lazim, Raudah, et al.
Published: (2013) -
Solvent effect on the folding dynamics and structure of E6-associated protein characterized from Ab initio protein folding simulations
by: Xu, Zhijun, et al.
Published: (2013) -
The intrinsic helical propensities of the helical fragments in prion protein under neutral and low pH conditions : a replica exchange molecular dynamics study
by: Zhang, John Z. H., et al.
Published: (2013) -
Helix inside a helix: Encapsulation of hydrogen-bonded water molecules in a staircase coordination polymer
by: Sreenivasulu, B., et al.
Published: (2014)