TFregulomeR reveals transcription factors' context-specific features and functions

由 Lin, Q.X.X., Thieffry, D., Jha, S., Benoukraf, T.
出版 2021

Whole genome DNA methylation: Beyond genes silencing

由 Tirado-Magallanes, R, Rebbani, K, Lim, R, Pradhan, S, Benoukraf, T
出版 2020

Assessing the efficiency and significance of Methylated DNA Immunoprecipitation (MeDIP) assays in using in vitro methylated genomic DNA

由 Jia, J, Pekowska, A, Jaeger, S, Benoukraf, T, Ferrier, P, Spicuglia, S
出版 2020

Initiation of V(D)J recombination by D?-associated recombination signal sequences: A critical control point in TCR? gene assembly

由 Franchini D.-M., Benoukraf T., Jaegar S., Ferrier P., Payet-Bornet D.
出版 2019

Increased intron retention is a post-transcriptional signature associated with progressive aging and Alzheimer’s disease

由 Adusumalli, S., Ngian, Z.-K., Lin, W.-Q., Benoukraf, T., Ong, C.-T.
出版 2022

GBSA: A comprehensive software for analysing whole genome bisulfite sequencing data

由 Benoukraf, T., Wongphayak, S., Hadi, L.H.A., Wu, M., Soong, R.
出版 2014

MethMotif: an integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles

由 Lin, Quy Xiao Xuan, Sian, Stephanie, An, Omer, Thieffry, Denis, Jha, Sudhakar, Benoukraf, Touati
出版 2019

NicE-seq: high resolution open chromatin profiling

由 PONNALURI, VK CHAITHANYA, ZHANG, GUOQIANG, ESTEVE, PIERRE-OLIVIER, SPRACKLIN, GEORGE, SIAN, STEPHANIE, XU, SHUANG-YONG, BENOUKRAF, TOUATI, PRADHAN, SRIHARSA
出版 2019

H3K4 tri-methylation provides an epigenetic signature of active enhancers

由 Pekowska, A., Benoukraf, T., Zacarias-Cabeza, J., Belhocine, M., Koch, F., Holota, H., Imbert, J., Andrau, J.-C., Ferrier, P., Spicuglia, S.
出版 2014

miREM: An expectation-maximization approach for prioritizing miRNAs associated with gene-set

由 Abdul Hadi L.H., Xuan Lin Q.X., Minh T.T., Loh M., Ng H.K., Salim A., Soong R., Benoukraf T.
出版 2020

Acquired resistance to combination treatment through loss of synergy with MEK and PI3K inhibitors in colorectal cancer

由 Bhattacharya B., Low S.H.H., Chong M.L., Chia D., Koh K.X., Sapari N.S., Kaye S., Hung H., Benoukraf T., Soong R.
出版 2020

Phosphorylation of Tet3 by cdk5 is critical for robust activation of BRN2 during neuronal differentiation

由 Rao, Vinay Kumar, Swarnaseetha, Adusumalli, Tham, Guo-Hong, Lin, Wei-Qi, Han, Bin-Bin, Benoukraf, Touati, Xu, Guo-Liang, Ong, Chin-Tong
出版 2022

LPS independent activation of the pro-inflammatory receptor Trem1 by C/EBP? in granulocytes

由 Suh, H.C, Benoukraf, T, Shyamsunder, P, Yin, T, Cao, Q, Said, J, Lee, S, Lim, R, Yang, H, Salotti, J, Johnson, P.F, Madan, V, Koeffler, H.P
出版 2020

The gene signature in CCAAT-enhancer-binding protein α dysfunctional acute myeloid leukemia predicts responsiveness to histone deacetylase inhibitors

由 Liss, A., Ooi, C.-H., Zjablovskaja, P., Benoukraf, T., Radomska, H.S., Ju, C., Wu, M., Balastik, M., Delwel, R., Brdicka, T., Tan, P., Tenen, D.G., Alberich-Jorda, M.
出版 2014

Characterisation of genome-wide PLZF/RARA target genes

由 Spicuglia, S., Vincent-Fabert, C., Benoukraf, T., Tibéri, G., Saurin, A.J., Zacarias-Cabeza, J., Grimwade, D., Mills, K., Calmels, B., Bertucci, F., Sieweke, M., Ferrier, P., Duprez, E.
出版 2014

NanoVar: Accurate characterization of patients' genomic structural variants using low-depth nanopore sequencing

由 Tham, C.Y., Tirado-Magallanes, R., Goh, Y., Fullwood, M.J., Koh, B.T.H., Wang, W., Ng, C.H., Chng, W.J., Thiery, A., Tenen, D.G., Benoukraf, T.
出版 2021

TIP60 represses activation of endogenous retroviral elements

由 Rajagopalan, D., Tirado-Magallanes, R., Bhatia, S.S., Teo, W.S., Sian, S., Hora, S., Lee, K.K., Zhang, Y., Jadhav, S.P., Wu, Y., Gan, Y.-H., Karnani, N., Benoukraf, T., Jha, S.
出版 2021

NanoVar : accurate characterization of patients' genomic structural variants using low-depth nanopore sequencing

由 Tham, Cheng Yong, Tirado-Magallanes, Roberto, Goh, Yufen, Fullwood, Melissa Jane, Koh, Bryan T. H., Wang, Wilson, Ng, Chin Hin, Chng, Wee Joo, Thiery, Alexandre, Tenen, Daniel G., Benoukraf, Touati
出版 2021

Datasets describing the growth and molecular features of hepatocellular carcinoma patient-derived xenograft cells grown in a three-dimensional macroporous hydrogel

由 Fong, E.L.S., Toh, T.B., Lin, Q.X.X., Liu, Z., Hooi, L., Rashid, M.B.M.A., Benoukraf, T., Chow, E.K.-H., Huynh, T.H., Yu, H.
出版 2021

ZNF143 mediates CTCF-bound promoter–enhancer loops required for murine hematopoietic stem and progenitor cell function

由 Zhou, Qiling, Yu, Miao, Tirado-Magallanes, Roberto, Li, Bin, Kong, Lingshi, Guo, Mingrui, Tan, Zi Hui, Lee, Sanghoon, Chai, Li, Numata, Akihiko, Benoukraf, Touati, Fullwood, Melissa Jane, Osato, Motomi, Ren, Bing, Tenen, Daniel G.
出版 2022